Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   M1R67_RS01660 Genome accession   NZ_CP096818
Coordinates   355033..355506 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain Mu1984     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350033..360506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1R67_RS01635 (M1R67_01635) - 350496..352601 (-) 2106 WP_001117590.1 HD domain-containing protein -
  M1R67_RS01640 (M1R67_01640) - 352641..352771 (-) 131 Protein_313 hypothetical protein -
  M1R67_RS01645 (M1R67_01645) rpoZ 352810..353088 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  M1R67_RS01650 (M1R67_01650) gmk 353161..353790 (-) 630 WP_000015937.1 guanylate kinase -
  M1R67_RS01655 (M1R67_01655) ispH 353913..354863 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M1R67_RS01660 (M1R67_01660) fimU 355033..355506 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  M1R67_RS01665 (M1R67_01665) pilV 355500..356060 (+) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  M1R67_RS01670 (M1R67_01670) pilW 356061..357062 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  M1R67_RS01675 (M1R67_01675) pilX 357059..357877 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=684403 M1R67_RS01660 WP_001214065.1 355033..355506(+) (fimU) [Acinetobacter baumannii strain Mu1984]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=684403 M1R67_RS01660 WP_001214065.1 355033..355506(+) (fimU) [Acinetobacter baumannii strain Mu1984]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1