Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   M1R67_RS01665 Genome accession   NZ_CP096818
Coordinates   355500..356060 (+) Length   186 a.a.
NCBI ID   WP_086221688.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Mu1984     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350500..361060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1R67_RS01640 (M1R67_01640) - 352641..352771 (-) 131 Protein_313 hypothetical protein -
  M1R67_RS01645 (M1R67_01645) rpoZ 352810..353088 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  M1R67_RS01650 (M1R67_01650) gmk 353161..353790 (-) 630 WP_000015937.1 guanylate kinase -
  M1R67_RS01655 (M1R67_01655) ispH 353913..354863 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M1R67_RS01660 (M1R67_01660) fimU 355033..355506 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  M1R67_RS01665 (M1R67_01665) pilV 355500..356060 (+) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  M1R67_RS01670 (M1R67_01670) pilW 356061..357062 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  M1R67_RS01675 (M1R67_01675) pilX 357059..357877 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20190.18 Da        Isoelectric Point: 8.4746

>NTDB_id=684404 M1R67_RS01665 WP_086221688.1 355500..356060(+) (pilV) [Acinetobacter baumannii strain Mu1984]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRRCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=684404 M1R67_RS01665 WP_086221688.1 355500..356060(+) (pilV) [Acinetobacter baumannii strain Mu1984]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCGGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

99.462

100

0.995
  pilV Acinetobacter baylyi ADP1

40.86

100

0.409