Detailed information NTG0684329

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M2A29_RS15985
• Genome accession: NZ_CP096812
• Coordinates: 3413943..3414803 (+)
• Length: 286 a.a.
• NCBI ID: WP_031999398.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain 51248
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3408943..3419803

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M2A29_RS15965 (M2A29_15960)	secG	3409548..3409877 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
M2A29_RS15970 (M2A29_15965)	tpiA	3409890..3410684 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
M2A29_RS15975 (M2A29_15970)	pilB	3410975..3412687 (+)	1713	WP_001274981.1	type IV-A pilus assembly ATPase PilB	Machinery gene
M2A29_RS15980 (M2A29_15975)	pilC	3412717..3413943 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
M2A29_RS15985	pilD	3413943..3414803 (+)	861	WP_031999398.1	A24 family peptidase	Machinery gene
M2A29_RS15990 (M2A29_15990)	coaE	3414805..3415401 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
M2A29_RS15995 (M2A29_15995)	-	3415398..3416312 (-)	915	WP_000075023.1	DMT family transporter	-
M2A29_RS16000 (M2A29_16000)	rlmB	3416348..3417097 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
M2A29_RS16005 (M2A29_16005)	-	3417199..3417525 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
M2A29_RS16010 (M2A29_16010)	-	3417602..3418912 (-)	1311	WP_272326412.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32125.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=684329 M2A29_RS15985 WP_031999398.1 3413943..3414803(+) (pilD) [Acinetobacter baumannii strain 51248]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=684329 M2A29_RS15985 WP_031999398.1 3413943..3414803(+) (pilD) [Acinetobacter baumannii strain 51248]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCATCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	99.65	100	0.997
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	48.106	92.308	0.444