Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   M2A29_RS09900 Genome accession   NZ_CP096812
Coordinates   2085990..2086370 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 51248     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2080990..2091370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2A29_RS09870 (M2A29_09855) tadA 2081109..2081612 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  M2A29_RS09875 (M2A29_09860) - 2081619..2082743 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  M2A29_RS09880 (M2A29_09865) ung 2082740..2083453 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  M2A29_RS09885 (M2A29_09870) - 2083504..2084100 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  M2A29_RS09890 (M2A29_09875) gspK 2084330..2085289 (-) 960 WP_103236482.1 type II secretion system minor pseudopilin GspK -
  M2A29_RS09895 (M2A29_09880) xcpW 2085289..2085990 (-) 702 WP_004747380.1 type II secretion system minor pseudopilin GspJ Machinery gene
  M2A29_RS09900 (M2A29_09885) xcpV 2085990..2086370 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  M2A29_RS09905 (M2A29_09890) - 2086360..2086914 (-) 555 WP_284625550.1 type II secretion system protein -
  M2A29_RS09910 (M2A29_09895) - 2086924..2087532 (-) 609 WP_103236481.1 TetR/AcrR family transcriptional regulator -
  M2A29_RS09915 (M2A29_09900) - 2087570..2088343 (-) 774 WP_000497302.1 TatD family hydrolase -
  M2A29_RS09920 (M2A29_09905) - 2088361..2088702 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  M2A29_RS09925 (M2A29_09910) - 2088714..2089694 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  M2A29_RS09930 (M2A29_09915) kdsB 2089706..2090467 (-) 762 WP_272327735.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=684314 M2A29_RS09900 WP_000836911.1 2085990..2086370(-) (xcpV) [Acinetobacter baumannii strain 51248]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=684314 M2A29_RS09900 WP_000836911.1 2085990..2086370(-) (xcpV) [Acinetobacter baumannii strain 51248]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1