NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	M2A29_RS09895	Genome accession	NZ_CP096812
Coordinates	2085289..2085990 (-)	Length	233 a.a.
NCBI ID	WP_004747380.1	Uniprot ID	A0A9E9PDK8
Organism	Acinetobacter baumannii strain 51248
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2080289..2090990

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M2A29_RS09865 (M2A29_09850)	-	2080596..2081039 (-)	444	WP_001246675.1	SRPBCC family protein	-
M2A29_RS09870 (M2A29_09855)	tadA	2081109..2081612 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
M2A29_RS09875 (M2A29_09860)	-	2081619..2082743 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
M2A29_RS09880 (M2A29_09865)	ung	2082740..2083453 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
M2A29_RS09885 (M2A29_09870)	-	2083504..2084100 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
M2A29_RS09890 (M2A29_09875)	gspK	2084330..2085289 (-)	960	WP_103236482.1	type II secretion system minor pseudopilin GspK	-
M2A29_RS09895 (M2A29_09880)	xcpW	2085289..2085990 (-)	702	WP_004747380.1	type II secretion system minor pseudopilin GspJ	Machinery gene
M2A29_RS09900 (M2A29_09885)	xcpV	2085990..2086370 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
M2A29_RS09905 (M2A29_09890)	-	2086360..2086914 (-)	555	WP_284625550.1	type II secretion system protein	-
M2A29_RS09910 (M2A29_09895)	-	2086924..2087532 (-)	609	WP_103236481.1	TetR/AcrR family transcriptional regulator	-
M2A29_RS09915 (M2A29_09900)	-	2087570..2088343 (-)	774	WP_000497302.1	TatD family hydrolase	-
M2A29_RS09920 (M2A29_09905)	-	2088361..2088702 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
M2A29_RS09925 (M2A29_09910)	-	2088714..2089694 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
M2A29_RS09930 (M2A29_09915)	kdsB	2089706..2090467 (-)	762	WP_272327735.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26629.59 Da Isoelectric Point: 9.5501

                                >NTDB_id=684313 M2A29_RS09895 WP_004747380.1 2085289..2085990(-) (xcpW) [Acinetobacter baumannii strain 51248]

MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=684313 M2A29_RS09895 WP_004747380.1 2085289..2085990(-) (xcpW) [Acinetobacter baumannii strain 51248]

ATGATAAAAAATAAATATATTCACATCCGCAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGCTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996

Detailed information NTG0684313