Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CTB89_RS11360 Genome accession   NZ_AP017891
Coordinates   2233556..2233951 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GN3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2228556..2238951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTB89_RS11335 thiE 2229155..2229796 (-) 642 WP_000483165.1 thiamine phosphate synthase -
  CTB89_RS11340 thiM 2229798..2230589 (-) 792 WP_020977448.1 hydroxyethylthiazole kinase -
  CTB89_RS11345 thiD 2230573..2231403 (-) 831 WP_000594962.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CTB89_RS11350 tenA 2231396..2232085 (-) 690 WP_000396067.1 thiaminase II -
  CTB89_RS11355 sceD 2232472..2233167 (-) 696 WP_000751996.1 lytic transglycosylase SceD -
  CTB89_RS11360 ssb 2233556..2233951 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  CTB89_RS11365 - 2234145..2234585 (+) 441 WP_000846746.1 YwpF-like family protein -
  CTB89_RS11370 fabZ 2234642..2235082 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CTB89_RS11375 murA 2235116..2236381 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CTB89_RS11380 - 2236492..2236725 (-) 234 WP_000384520.1 DUF1146 family protein -
  CTB89_RS11385 - 2236857..2236934 (-) 78 Protein_2123 hypothetical protein -
  CTB89_RS11395 - 2237321..2237725 (-) 405 WP_020977449.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=68431 CTB89_RS11360 WP_000932694.1 2233556..2233951(-) (ssb) [Staphylococcus aureus strain GN3]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=68431 CTB89_RS11360 WP_000932694.1 2233556..2233951(-) (ssb) [Staphylococcus aureus strain GN3]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment