Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M2A29_RS01940 Genome accession   NZ_CP096812
Coordinates   413116..413751 (-) Length   211 a.a.
NCBI ID   WP_272297549.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 51248     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 408116..418751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2A29_RS01905 (M2A29_01905) mlaE 408452..409228 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  M2A29_RS01910 (M2A29_01910) - 409228..409908 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  M2A29_RS01915 (M2A29_01915) - 409935..410576 (+) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  M2A29_RS01920 (M2A29_01920) - 410588..410875 (+) 288 WP_284625859.1 STAS domain-containing protein -
  M2A29_RS01925 (M2A29_01925) - 410945..411958 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  M2A29_RS01930 (M2A29_01930) - 412116..412697 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  M2A29_RS01935 (M2A29_01935) - 412712..413113 (+) 402 WP_000849701.1 NUDIX domain-containing protein -
  M2A29_RS01940 (M2A29_01940) comF 413116..413751 (-) 636 WP_272297549.1 phosphoribosyltransferase family protein Machinery gene
  M2A29_RS01945 (M2A29_01945) recG 413744..415789 (-) 2046 WP_016686247.1 ATP-dependent DNA helicase RecG -
  M2A29_RS01950 (M2A29_01950) - 415810..416625 (+) 816 WP_000547772.1 NAD(P)H-binding protein -
  M2A29_RS01955 (M2A29_01955) adeT2 416705..417691 (+) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24600.78 Da        Isoelectric Point: 9.7140

>NTDB_id=684305 M2A29_RS01940 WP_272297549.1 413116..413751(-) (comF) [Acinetobacter baumannii strain 51248]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQIL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPIWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=684305 M2A29_RS01940 WP_272297549.1 413116..413751(-) (comF) [Acinetobacter baumannii strain 51248]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAATCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAATTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

98.578

100

0.986
  comF Acinetobacter baumannii D1279779

97.63

100

0.976