Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PALA40_RS25295 Genome accession   NZ_CP110349
Coordinates   5348967..5349461 (-) Length   164 a.a.
NCBI ID   WP_003292123.1    Uniprot ID   A0ABY1WHY7
Organism   Pseudomonas aeruginosa strain PALA40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5343967..5354461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA40_RS25280 (PALA40_04984) comEC 5344400..5345278 (-) 879 WP_019486743.1 ComEC/Rec2 family competence protein Machinery gene
  PALA40_RS25285 (PALA40_04985) - 5345280..5347529 (-) 2250 WP_196495448.1 Mov34/MPN/PAD-1 family protein -
  PALA40_RS25290 (PALA40_04986) - 5347538..5348698 (-) 1161 WP_019486741.1 hypothetical protein -
  PALA40_RS25295 (PALA40_04987) radC 5348967..5349461 (-) 495 WP_003292123.1 RadC family protein Machinery gene
  PALA40_RS25300 (PALA40_04988) - 5349657..5350400 (-) 744 WP_019485626.1 DsbA family protein -
  PALA40_RS25305 (PALA40_04989) - 5350414..5353302 (-) 2889 WP_023083165.1 conjugative transfer ATPase -
  PALA40_RS25310 (PALA40_04990) - 5353302..5353736 (-) 435 WP_023083166.1 TIGR03751 family conjugal transfer lipoprotein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17848.54 Da        Isoelectric Point: 6.6460

>NTDB_id=684191 PALA40_RS25295 WP_003292123.1 5348967..5349461(-) (radC) [Pseudomonas aeruginosa strain PALA40]
MSLVIADSRPESLTLIAAQHEDWIIRQAITLLENRVFKAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDNQHQVLAFE
PLFKGTVDQTSVYPRVVVQRALALNASALILAHQHPSGNTEPSAADRAITERLKSALATVDVRVLDHFIVGKGSPYSFAE
AGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=684191 PALA40_RS25295 WP_003292123.1 5348967..5349461(-) (radC) [Pseudomonas aeruginosa strain PALA40]
ATGTCTCTTGTCATCGCCGACTCCCGCCCGGAGTCGCTCACCCTGATCGCCGCCCAGCACGAAGACTGGATCATCCGGCA
GGCCATCACCCTGCTGGAGAACCGCGTGTTCAAGGCCGGTCCAGCGCTGGGCAGTCCCGCCGCCGTGCGCGACTACCTGC
GCCTGAAACTGGTCGCGGAGCCGAACGAAATCTTCGCCGTCGTGTTTCTCGACAACCAGCACCAGGTGCTCGCCTTCGAG
CCGCTGTTCAAGGGCACGGTCGACCAGACTTCGGTGTATCCGAGGGTGGTGGTCCAGCGTGCGCTGGCGCTCAACGCTTC
GGCGCTGATCCTGGCGCATCAGCATCCCTCGGGGAACACCGAGCCCTCGGCCGCTGATCGTGCGATCACCGAGCGGCTGA
AGAGCGCCCTGGCCACCGTCGATGTCCGGGTACTGGATCACTTCATCGTCGGCAAGGGCAGCCCGTACTCGTTCGCCGAA
GCCGGCTTGTTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.26

89.024

0.421