Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   PALA40_RS25280 Genome accession   NZ_CP110349
Coordinates   5344400..5345278 (-) Length   292 a.a.
NCBI ID   WP_019486743.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA40     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5339400..5350278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA40_RS25255 (PALA40_04979) - 5340364..5340717 (-) 354 WP_003140982.1 hypothetical protein -
  PALA40_RS25260 (PALA40_04980) - 5340714..5342120 (-) 1407 WP_023083161.1 integrating conjugative element protein -
  PALA40_RS25265 (PALA40_04981) - 5342131..5343075 (-) 945 WP_023083162.1 TIGR03756 family integrating conjugative element protein -
  PALA40_RS25270 (PALA40_04982) - 5343072..5343509 (-) 438 WP_023083163.1 TIGR03757 family integrating conjugative element protein -
  PALA40_RS25275 (PALA40_04983) - 5343726..5344403 (-) 678 WP_010792116.1 hypothetical protein -
  PALA40_RS25280 (PALA40_04984) comEC 5344400..5345278 (-) 879 WP_019486743.1 ComEC/Rec2 family competence protein Machinery gene
  PALA40_RS25285 (PALA40_04985) - 5345280..5347529 (-) 2250 WP_196495448.1 Mov34/MPN/PAD-1 family protein -
  PALA40_RS25290 (PALA40_04986) - 5347538..5348698 (-) 1161 WP_019486741.1 hypothetical protein -
  PALA40_RS25295 (PALA40_04987) radC 5348967..5349461 (-) 495 WP_003292123.1 RadC family protein Machinery gene

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33426.83 Da        Isoelectric Point: 5.7783

>NTDB_id=684190 PALA40_RS25280 WP_019486743.1 5344400..5345278(-) (comEC) [Pseudomonas aeruginosa strain PALA40]
MPGEMILKIWDVEHGACAMLTHRSAYGVEGRLAMIDSGDNSTTGWKPSTYIKHYLKRNVLDYLFVTNADLDHISDLNNLW
KEGITVSTFFRNRSVSPEVMRIIKEASGELTEDIERYLDIHAGYVYPVDVPFDESMGGISVRTFWNSTPPFYDTNNLSMV
AFFKYGPFKILFPGDLEEDGWLALLEQPAFRAELIDTTVLVASHHGRENGYCRALFDYCHPRAIVMSDKAIVHDTQGMTQ
TYRQRVIDHWPNGVLVATTGKQRRVLTTRRDGWIQFNVNDRGDFTIYTECYG

Nucleotide


Download         Length: 879 bp        

>NTDB_id=684190 PALA40_RS25280 WP_019486743.1 5344400..5345278(-) (comEC) [Pseudomonas aeruginosa strain PALA40]
ATGCCAGGCGAGATGATCTTGAAGATATGGGACGTTGAACATGGCGCCTGCGCCATGCTCACACATCGCTCTGCCTACGG
CGTGGAAGGGCGCCTGGCGATGATCGACTCGGGTGACAACAGCACCACAGGCTGGAAGCCGAGCACCTACATCAAGCACT
ACCTGAAGCGCAACGTTCTGGACTACCTGTTCGTGACGAATGCGGACCTCGACCACATCAGCGATCTGAACAACCTGTGG
AAAGAAGGAATCACGGTATCCACGTTCTTCCGCAATCGCAGCGTGTCACCCGAAGTCATGAGGATCATCAAGGAGGCCAG
CGGCGAACTGACCGAGGACATCGAACGATACTTGGACATTCATGCTGGCTACGTCTACCCCGTGGACGTCCCCTTCGATG
AGAGTATGGGAGGCATCTCGGTGCGGACGTTTTGGAACTCGACGCCACCCTTTTACGACACGAACAACCTGAGCATGGTG
GCATTCTTCAAGTACGGGCCATTCAAGATTCTGTTTCCCGGCGACCTTGAGGAAGACGGATGGCTGGCGCTGCTCGAACA
GCCGGCATTTCGAGCTGAGCTCATCGACACGACCGTGCTCGTGGCATCCCACCACGGCCGAGAGAACGGCTACTGCCGGG
CGCTATTCGACTACTGTCACCCGCGAGCGATCGTGATGTCCGACAAAGCAATCGTCCATGATACGCAGGGGATGACTCAG
ACCTATCGCCAGCGCGTCATAGATCACTGGCCGAACGGAGTTCTTGTCGCCACGACTGGAAAACAGCGCCGTGTGCTCAC
GACGCGACGCGATGGCTGGATTCAATTCAACGTCAATGATCGTGGCGATTTCACCATCTATACGGAGTGCTATGGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila str. Paris

39.35

94.863

0.373