Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   CTB89_RS03020 Genome accession   NZ_AP017891
Coordinates   626945..627514 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GN3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 621945..632514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTB89_RS02995 cysE 623158..623805 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  CTB89_RS03000 cysS 623789..625189 (+) 1401 WP_020977020.1 cysteine--tRNA ligase -
  CTB89_RS03005 - 625182..625586 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  CTB89_RS03010 rlmB 625594..626340 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CTB89_RS03015 - 626340..626864 (+) 525 WP_000664738.1 NYN domain-containing protein -
  CTB89_RS03020 sigH 626945..627514 (+) 570 WP_000872876.1 RNA polymerase sigma factor Regulator
  CTB89_RS03025 rpmG 627629..627772 (+) 144 WP_120173159.1 50S ribosomal protein L33 -
  CTB89_RS03030 secE 627828..628010 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  CTB89_RS03035 nusG 628023..628571 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  CTB89_RS03040 rplK 628752..629174 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  CTB89_RS03045 rplA 629382..630074 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  CTB89_RS03055 rplJ 630346..630846 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  CTB89_RS03060 rplL 630889..631257 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  CTB89_RS03065 - 631432..632040 (+) 609 WP_000020299.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=68400 CTB89_RS03020 WP_000872876.1 626945..627514(+) (sigH) [Staphylococcus aureus strain GN3]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=68400 CTB89_RS03020 WP_000872876.1 626945..627514(+) (sigH) [Staphylococcus aureus strain GN3]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984

Multiple sequence alignment