Detailed information NTG0683975

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: PALA52_RS16410
• Genome accession: NZ_CP110347
• Coordinates: 3574375..3575655 (-)
• Length: 426 a.a.
• NCBI ID: WP_003087924.1
• Uniprot ID: Q02KU5
• Organism: Pseudomonas aeruginosa strain PALA52
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3569375..3580655

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA52_RS16400 (PALA52_03257)	hupB	3571438..3571710 (-)	273	WP_003087931.1	nucleoid-associated protein HU-beta	-
PALA52_RS16405 (PALA52_03258)	lon	3571846..3574242 (-)	2397	WP_058141083.1	endopeptidase La	-
PALA52_RS16410 (PALA52_03259)	clpX	3574375..3575655 (-)	1281	WP_003087924.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
PALA52_RS16415 (PALA52_03260)	clpP	3575760..3576401 (-)	642	WP_003098129.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
PALA52_RS16420 (PALA52_03261)	tig	3576495..3577805 (-)	1311	WP_263957230.1	trigger factor	-
PALA52_RS16425 (PALA52_03262)	parR	3578037..3578744 (+)	708	WP_058141085.1	response regulator transcription factor ParR	-
PALA52_RS16430 (PALA52_03263)	parS	3578745..3580031 (+)	1287	WP_024917104.1	sensor histidine kinase ParS	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46991.78 Da
• Isoelectric Point: 4.8347

>NTDB_id=683975 PALA52_RS16410 WP_003087924.1 3574375..3575655(-) (clpX) [Pseudomonas aeruginosa strain PALA52]
MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAESSGHKLPAPKEIRTILDQYVI
GQERAKKVLAVAVYNHYKRLNQRDKKDDIELGKSNILMIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVE
NIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD
TRNILFICGGAFAGLERVIQNRSARGGIGFNAEVRSQEMGKKVGEAFKEVEPEDLVKFGLIPEFVGRLPVIATLDELDEA
ALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVARKALERKTGARGLRSILEGILLDTMYEIPSQQDVSKVVIDE
SVIDGSSQPLMIYENSEKPAKAAPEA

Nucleotide

• Length: 1281 bp

>NTDB_id=683975 PALA52_RS16410 WP_003087924.1 3574375..3575655(-) (clpX) [Pseudomonas aeruginosa strain PALA52]
ATGACTGATACCCGCAACGGCGAGGACAACGGCAAGCTGCTGTATTGCTCCTTCTGCGGCAAGAGCCAGCACGAAGTGCG
CAAGTTGATTGCCGGCCCCTCGGTCTTTATCTGCGACGAGTGTGTCGACCTGTGCAATGACATCATCCGCGAGGAGGTGC
AGGAAGCGCAGGCGGAAAGTAGTGGGCACAAACTTCCGGCGCCGAAAGAGATCCGCACCATCCTCGATCAGTACGTGATC
GGGCAGGAGCGGGCCAAGAAGGTTCTGGCGGTAGCGGTATACAACCACTACAAGCGCCTCAACCAGCGTGACAAGAAGGA
CGATATCGAGCTCGGCAAGAGCAACATTCTGATGATCGGCCCAACCGGCTCGGGCAAGACCCTGCTGGCCGAGACCCTCG
CACGTTTGCTGAACGTGCCGTTCACCATCGCCGATGCGACCACGCTGACGGAAGCGGGCTACGTGGGCGAGGATGTCGAG
AACATCATCCAGAAATTGTTGCAGAAGTGCGATTACGATGTGGAGAAGGCCCAGATGGGTATCGTCTACATCGACGAGAT
CGACAAGATTTCCCGGAAGTCGGACAACCCCTCCATCACTCGCGACGTTTCCGGCGAGGGTGTGCAGCAGGCCTTGCTGA
AACTCATCGAGGGCACGGTTGCCTCGGTACCGCCGCAAGGTGGTCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTCGAT
ACGCGCAACATCCTGTTCATCTGCGGCGGCGCTTTCGCTGGCCTGGAGCGGGTCATCCAGAACCGTTCCGCGCGTGGCGG
CATCGGTTTCAATGCCGAAGTGCGCAGCCAGGAGATGGGCAAGAAGGTCGGCGAGGCGTTCAAGGAAGTCGAGCCGGAAG
ATCTCGTCAAGTTCGGTCTTATTCCCGAGTTTGTAGGGCGTTTGCCGGTTATCGCGACTCTTGATGAGCTCGACGAGGCT
GCGCTCATGCAGATCCTGACCGAGCCGAAGAACGCCCTCACCAAGCAGTACGCCAAGCTGTTCGAGATGGAAGGCGTCGA
TCTCGAATTCCGTCCGGACGCGCTCAAGGCGGTTGCCCGCAAGGCGCTCGAACGCAAGACCGGTGCACGTGGCTTGCGTT
CAATTCTCGAAGGTATCCTTCTCGATACCATGTACGAGATTCCCTCCCAGCAGGATGTCAGCAAGGTGGTCATCGATGAG
AGTGTCATCGATGGCTCGTCGCAACCCCTGATGATCTACGAGAACAGCGAAAAGCCAGCCAAGGCTGCGCCTGAGGCATG
A

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (113-311)

3D structure

• AlphaFold DB: Q02KU5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	60.934	95.54	0.582
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.198	94.836	0.523