Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SCLO_RS12030 Genome accession   NZ_AP017655
Coordinates   2408524..2409099 (-) Length   191 a.a.
NCBI ID   WP_066517858.1    Uniprot ID   -
Organism   Sphingobium cloacae strain JCM 10874     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2403524..2414099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCLO_RS23895 - 2403784..2404041 (-) 258 WP_231923222.1 hypothetical protein -
  SCLO_RS12005 (SCLO_1021190) - 2404174..2405466 (-) 1293 WP_066517860.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  SCLO_RS12010 (SCLO_1021200) htpX 2405511..2406458 (-) 948 WP_174521964.1 zinc metalloprotease HtpX -
  SCLO_RS12015 - 2406545..2406718 (+) 174 WP_083949095.1 DUF1674 domain-containing protein -
  SCLO_RS12020 (SCLO_1021210) - 2406882..2407343 (+) 462 WP_231923223.1 hypothetical protein -
  SCLO_RS12025 (SCLO_1021220) - 2407460..2408359 (+) 900 WP_066517859.1 UTP--glucose-1-phosphate uridylyltransferase -
  SCLO_RS12030 (SCLO_1021230) ssb 2408524..2409099 (-) 576 WP_066517858.1 single-stranded DNA-binding protein Machinery gene
  SCLO_RS12035 (SCLO_1021240) - 2409163..2411025 (-) 1863 WP_066517856.1 ferrous iron transporter B -
  SCLO_RS12040 - 2411022..2411294 (-) 273 WP_066517853.1 FeoA family protein -
  SCLO_RS12045 (SCLO_1021250) - 2411448..2412107 (-) 660 WP_066517852.1 COQ9 family protein -
  SCLO_RS12050 (SCLO_1021260) - 2412154..2413053 (-) 900 WP_066517851.1 DMT family transporter -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 19481.10 Da        Isoelectric Point: 5.0178

>NTDB_id=68389 SCLO_RS12030 WP_066517858.1 2408524..2409099(-) (ssb) [Sphingobium cloacae strain JCM 10874]
MAGSVNKVILVGNLGADPEVRSFQSGGKVCNIRIATSENWKDRMTGERKERTEWHNVAIFGEGLAGVAERYLRKGSKVYV
EGQLRTRKWQDQSGNDRYTTEVVLQGPGAVLTMLDGAPGGGGQGGGGGRSSGGGDWSGGSSGFGGGDYDDFGGGGGGNFG
GGQGGGRSQGSGRGGAGGPNFDNDLDDEVPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=68389 SCLO_RS12030 WP_066517858.1 2408524..2409099(-) (ssb) [Sphingobium cloacae strain JCM 10874]
ATGGCGGGCTCGGTGAACAAGGTCATTCTGGTCGGCAATCTGGGCGCGGACCCGGAAGTCCGCAGCTTCCAGAGCGGCGG
CAAGGTGTGCAACATCCGCATCGCCACGTCCGAAAACTGGAAGGACCGCATGACCGGCGAGCGCAAGGAGCGCACCGAAT
GGCATAATGTGGCGATCTTCGGCGAAGGGCTGGCCGGGGTGGCGGAACGCTATCTGCGCAAGGGCAGCAAGGTCTATGTC
GAGGGGCAGCTTCGCACCCGCAAATGGCAGGATCAGTCGGGCAACGACCGCTACACCACCGAAGTGGTGCTGCAAGGGCC
GGGCGCGGTGCTGACCATGCTGGACGGCGCGCCGGGCGGCGGTGGTCAGGGCGGCGGCGGGGGCCGTTCGTCGGGCGGCG
GCGACTGGTCGGGCGGGTCGAGCGGCTTTGGCGGCGGCGATTATGACGATTTCGGCGGCGGCGGCGGCGGCAATTTCGGC
GGCGGTCAGGGCGGCGGCCGCTCCCAGGGCAGCGGACGCGGCGGCGCGGGCGGGCCGAATTTCGACAATGACCTGGATGA
TGAAGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.421

99.476

0.482
  ssb Glaesserella parasuis strain SC1401

47.644

100

0.476

Multiple sequence alignment