Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SCLO_RS07170 Genome accession   NZ_AP017655
Coordinates   1464165..1465532 (-) Length   455 a.a.
NCBI ID   WP_066516965.1    Uniprot ID   A0A1E1F1A8
Organism   Sphingobium cloacae strain JCM 10874     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1459165..1470532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCLO_RS07150 (SCLO_1012740) - 1459952..1460650 (+) 699 WP_066516969.1 endonuclease/exonuclease/phosphatase family protein -
  SCLO_RS07155 (SCLO_1012750) - 1460693..1463023 (+) 2331 WP_066516968.1 patatin-like protein -
  SCLO_RS07160 (SCLO_1012760) - 1463020..1463613 (+) 594 WP_096362106.1 hypothetical protein -
  SCLO_RS07165 (SCLO_1012770) - 1463659..1464153 (-) 495 WP_066516967.1 CvpA family protein -
  SCLO_RS07170 (SCLO_1012780) radA 1464165..1465532 (-) 1368 WP_066516965.1 DNA repair protein RadA Machinery gene
  SCLO_RS07175 (SCLO_1012790) eda 1465731..1466363 (-) 633 WP_066516964.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -
  SCLO_RS07180 (SCLO_1012800) glk 1466365..1467330 (-) 966 WP_066516963.1 glucokinase -
  SCLO_RS07185 (SCLO_1012810) edd 1467327..1469159 (-) 1833 WP_066516961.1 phosphogluconate dehydratase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 47711.55 Da        Isoelectric Point: 6.3966

>NTDB_id=68388 SCLO_RS07170 WP_066516965.1 1464165..1465532(-) (radA) [Sphingobium cloacae strain JCM 10874]
MAKAKRKFVCQQCGAVSSRWQGQCDDCGEWNSIVEEAAETVFSSRHDLQTGGRAISLVGLDSAVQLPDRTGTGIAEFDRA
LGGGIVSGSATLIGGDPGIGKSTLLLQAAARIAARGLAVAYISGEEAADQVRLRARRLGLGDAPVQLASATSVRDILTTL
GEGEPPALLVIDSIQTMHSDLIEGAPGTVSQVRASAQELIRFAKQRGTALVMVGHVTKDGSIAGPRVLEHMVDTVLSFEG
ERSHQYRILRAIKNRFGGTDEIGVFAMVAEGLEEVANPSALFLTHRDESVTGATVFPALEGTRPVLVEIQALVVRLSSGA
TPRRAVVGWDSGRLAMILAVLEARCGLSFSTCEVYLNVAGGYRLSDPAADLAVAAALISALTERPVPADVVLFGEIALSG
EIRPVAHAPLRLRESAKLGFNRAYIPAAAADGVKGISVSGYRALSQLVDQMLGRG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=68388 SCLO_RS07170 WP_066516965.1 1464165..1465532(-) (radA) [Sphingobium cloacae strain JCM 10874]
ATGGCCAAGGCAAAGCGCAAATTCGTCTGTCAGCAATGCGGCGCCGTATCGAGCCGGTGGCAGGGCCAGTGCGACGATTG
CGGCGAATGGAACAGCATCGTCGAGGAAGCCGCCGAAACCGTTTTCTCCTCGCGCCACGACCTTCAGACCGGGGGCCGCG
CCATCTCCCTCGTCGGTCTCGACAGCGCGGTCCAGCTTCCCGACCGCACCGGCACCGGCATCGCGGAATTCGACCGTGCG
CTGGGCGGCGGCATCGTCTCCGGCTCGGCCACGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCTGCTGCA
AGCCGCCGCCCGCATCGCCGCGCGCGGCCTTGCCGTCGCCTATATCAGCGGGGAGGAAGCCGCCGATCAGGTGCGCCTGC
GCGCCCGGCGCCTCGGTCTTGGCGACGCTCCCGTGCAGCTTGCCAGCGCCACCTCCGTCCGCGACATCCTCACGACCTTG
GGGGAGGGCGAGCCGCCCGCGCTGCTCGTCATCGATTCGATCCAGACGATGCACAGCGACCTGATCGAAGGCGCGCCCGG
CACCGTCAGCCAGGTCCGCGCCTCGGCCCAGGAACTCATCCGCTTCGCCAAGCAGCGCGGCACCGCGCTCGTCATGGTCG
GCCATGTGACCAAGGACGGCAGCATCGCGGGTCCCCGCGTGCTCGAACATATGGTCGATACCGTCCTGAGCTTCGAGGGC
GAGCGCAGCCACCAGTATCGCATCCTGCGCGCGATCAAGAACCGCTTCGGCGGCACGGACGAGATCGGCGTCTTCGCCAT
GGTCGCCGAAGGGCTGGAGGAAGTCGCCAATCCCTCCGCGCTGTTCCTCACCCATCGCGACGAAAGCGTGACCGGCGCGA
CGGTCTTCCCCGCATTGGAAGGCACGCGCCCGGTGCTGGTCGAAATACAGGCGCTGGTCGTCCGCCTCTCCAGCGGAGCC
ACGCCCCGCCGCGCGGTGGTCGGCTGGGACAGCGGGCGGCTCGCCATGATCCTCGCCGTGCTGGAGGCGCGTTGCGGCCT
CAGCTTCTCCACCTGCGAAGTCTATCTGAACGTCGCGGGCGGATACCGCCTGTCGGACCCGGCGGCGGATCTCGCCGTCG
CCGCCGCGCTCATCTCCGCTTTGACCGAACGTCCCGTCCCCGCCGATGTCGTCCTCTTCGGCGAGATCGCTCTGTCGGGC
GAAATCCGCCCGGTCGCCCACGCCCCGCTGCGCCTGCGCGAATCGGCGAAGCTCGGCTTCAATCGTGCATATATTCCGGC
CGCCGCCGCGGACGGCGTGAAGGGCATCTCCGTCAGCGGCTATCGCGCCCTGTCGCAGCTTGTTGACCAGATGCTCGGGC
GCGGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(82-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E1F1A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.619

100

0.484
  radA Streptococcus mitis NCTC 12261

45.934

100

0.459
  radA Streptococcus pneumoniae Rx1

45.714

100

0.457
  radA Streptococcus pneumoniae D39

45.714

100

0.457
  radA Streptococcus pneumoniae R6

45.714

100

0.457
  radA Streptococcus pneumoniae TIGR4

45.714

100

0.457
  radA Streptococcus mitis SK321

47.113

95.165

0.448

Multiple sequence alignment