Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PALA35_RS12975 Genome accession   NZ_CP110346
Coordinates   2713963..2714607 (+) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain PALA35     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2708963..2719607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA35_RS12960 (PALA35_02582) - 2709600..2710814 (+) 1215 WP_031692812.1 MFS transporter -
  PALA35_RS12965 (PALA35_02583) - 2710830..2711858 (-) 1029 WP_009314109.1 AraC family transcriptional regulator -
  PALA35_RS12970 (PALA35_02584) pqsH 2712473..2713621 (+) 1149 WP_269974964.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  PALA35_RS12975 (PALA35_02585) letA 2713963..2714607 (+) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PALA35_RS12980 (PALA35_02586) uvrC 2714608..2716434 (+) 1827 WP_031685751.1 excinuclease ABC subunit UvrC -
  PALA35_RS12985 (PALA35_02587) pgsA 2716468..2717028 (+) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PALA35_RS12995 (PALA35_02589) - 2717897..2718757 (-) 861 WP_225011024.1 fimbrial protein -
  PALA35_RS31575 - 2719094..2719303 (-) 210 WP_071533897.1 transposase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=683867 PALA35_RS12975 WP_003090351.1 2713963..2714607(+) (letA) [Pseudomonas aeruginosa strain PALA35]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=683867 PALA35_RS12975 WP_003090351.1 2713963..2714607(+) (letA) [Pseudomonas aeruginosa strain PALA35]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAGCTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCTTGGAGGCGACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGACCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTACATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAACTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537