Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   SNAG_RS08050 Genome accession   NZ_AP017652
Coordinates   1552147..1552836 (-) Length   229 a.a.
NCBI ID   WP_096408273.1    Uniprot ID   -
Organism   Streptococcus sp. NPS 308     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1547147..1557836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS08030 (SNAG_1574) mvaD 1548078..1549031 (-) 954 WP_096408262.1 diphosphomevalonate decarboxylase -
  SNAG_RS08035 (SNAG_1575) mvk 1549013..1549891 (-) 879 WP_096408265.1 mevalonate kinase -
  SNAG_RS08040 (SNAG_1576) cbpC 1550013..1551032 (-) 1020 WP_096408268.1 choline-binding protein CbpC -
  SNAG_RS09965 - 1551050..1551424 (-) 375 WP_269456855.1 hypothetical protein -
  SNAG_RS10010 - 1551437..1552063 (-) 627 Protein_1506 N-acetylmuramoyl-L-alanine amidase family protein -
  SNAG_RS08050 (SNAG_1578) covR 1552147..1552836 (-) 690 WP_096408273.1 response regulator transcription factor Regulator
  SNAG_RS08055 (SNAG_1579) gndA 1552848..1554272 (-) 1425 WP_000158765.1 NADP-dependent phosphogluconate dehydrogenase -
  SNAG_RS08060 (SNAG_1580) - 1554348..1555787 (-) 1440 WP_096408275.1 cell division site-positioning protein MapZ family protein -
  SNAG_RS08065 (SNAG_1581) - 1555800..1556957 (-) 1158 WP_096408278.1 class I SAM-dependent RNA methyltransferase -
  SNAG_RS08075 (SNAG_1582) gpsB 1557452..1557781 (-) 330 WP_000146521.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26823.95 Da        Isoelectric Point: 7.0640

>NTDB_id=68363 SNAG_RS08050 WP_096408273.1 1552147..1552836(-) (covR) [Streptococcus sp. NPS 308]
MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNAHLEDMTAQDFADKLSRTKPASVIMVL
DHREELQDQIETIQRFAVSYIYKPVIIDNLVARISAIFRGRDFIDQHCSQMKVPTSYRNLRMDVEHHTVYRGEEMIALTR
REYDLLATLMGSKKVLTREQLLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=68363 SNAG_RS08050 WP_096408273.1 1552147..1552836(-) (covR) [Streptococcus sp. NPS 308]
ATGGGGAAACGGATTTTATTACTTGAGAAAGAACGAAATCTAGCTCATTTTCTCAGTCTGGAACTCCAAAAAGAGCAATA
CCGAGTCGATTTGGTAGAGGAGGGGCAAAAAGCCCTCTCCATGGCTCTCCAGACGGACTATGACTTGATTTTACTGAATG
CTCATCTGGAGGATATGACGGCCCAGGATTTTGCAGACAAGCTGAGTCGGACAAAACCAGCCTCAGTGATTATGGTCTTG
GACCATCGCGAAGAATTGCAAGACCAGATTGAGACAATCCAGCGCTTCGCCGTTTCTTACATCTATAAGCCAGTGATTAT
TGATAATCTGGTAGCTCGTATTTCAGCGATTTTCCGAGGTCGGGACTTCATTGACCAACACTGTAGTCAGATGAAGGTTC
CAACGTCATACCGCAACCTACGTATGGATGTAGAACATCATACCGTTTATCGTGGCGAGGAGATGATTGCTCTGACGCGC
CGTGAGTATGACCTCTTGGCTACTCTCATGGGAAGCAAGAAAGTCTTGACTCGTGAGCAGTTATTGGAAAGTGTTTGGAA
GTACGAAAGTGCGACAGAAACCAATATCGTGGATGTTTATATCCGTTATCTACGTAGCAAGCTTGATGTAAAAGGTCAAA
AAAGCTACATTAAAACCGTGCGTGGTGTTGGTTACACCATGCAAGAATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-226)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.696

100

0.489
  covR Lactococcus lactis subsp. lactis strain DGCC12653

46.491

99.563

0.463

Multiple sequence alignment