Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   OLL86_RS07465 Genome accession   NZ_CP110225
Coordinates   1583963..1585804 (-) Length   613 a.a.
NCBI ID   WP_264779776.1    Uniprot ID   -
Organism   Gallibacterium anatis strain IMT49310     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1578963..1590804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLL86_RS07445 (OLL86_07445) cytR 1579300..1580295 (+) 996 WP_264779774.1 substrate-binding domain-containing protein Regulator
  OLL86_RS07450 (OLL86_07450) - 1580429..1581463 (+) 1035 WP_013746313.1 TAXI family TRAP transporter solute-binding subunit -
  OLL86_RS07455 (OLL86_07455) - 1581466..1581960 (+) 495 WP_039137650.1 DUF1850 domain-containing protein -
  OLL86_RS07460 (OLL86_07460) - 1581929..1583905 (+) 1977 WP_264779775.1 TRAP transporter permease -
  OLL86_RS07465 (OLL86_07465) recQ 1583963..1585804 (-) 1842 WP_264779776.1 DNA helicase RecQ Machinery gene
  OLL86_RS07470 (OLL86_07470) - 1585794..1586636 (-) 843 WP_021460910.1 phospholipase A -
  OLL86_RS07475 (OLL86_07475) cyaY 1586652..1586966 (-) 315 WP_013746318.1 iron donor protein CyaY -
  OLL86_RS07480 (OLL86_07480) - 1587077..1587202 (+) 126 WP_264779777.1 hypothetical protein -
  OLL86_RS07485 (OLL86_07485) - 1587212..1587331 (+) 120 WP_018345938.1 LPS translocon maturation chaperone LptM -
  OLL86_RS07490 (OLL86_07490) lysA 1587353..1588606 (+) 1254 WP_039080679.1 diaminopimelate decarboxylase -
  OLL86_RS07495 (OLL86_07495) - 1588797..1589159 (+) 363 WP_021460908.1 PepSY domain-containing protein -
  OLL86_RS07500 (OLL86_07500) - 1589353..1590528 (+) 1176 WP_406600105.1 MFS transporter -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 70166.46 Da        Isoelectric Point: 8.4928

>NTDB_id=683595 OLL86_RS07465 WP_264779776.1 1583963..1585804(-) (recQ) [Gallibacterium anatis strain IMT49310]
MCSNSEDQAEALSPDLIRAKSILQDVFGYQQFRQGQQQIIAATLQGQSSFILMATGGGKSLCYQIPALCFPGLTLVVSPL
IALMQDQVDQLTANGVAAAYLNSSQTLEQQREIEQQALSGKLKLLYISPEKVMTTAFFYFIQQCQVSFIAIDEAHCISQW
GHDFRPEYSQLRSLTRVFPHIPIMALTATADRVTREDILELLNLQQPFVYIGSFDRPNIRYTVVEKFKPQEQLLKFVKSQ
KGKSGIIYANSRNKVERLAEMLQRKGISAKAYHAGFSNEIREQVQHDFQRDNIQIIVATIAFGMGINKPNIRFVLHYDLP
RSIEAYYQETGRAGRDDLPAEAVLFYDHQDYLWLNKLLQEKPDSSQKMIEQHKLQAMGEFAEAQTCRRLVLLNYFAEHRH
QPCNNCDICLNPPKKYDGLIDAQKILSTVYRTGQKFGSYYVIAVLRGVQNQKIQELQHDKLSVFGIGKDKSQEYWHSVIR
QLIHLGFLSQNIANYSALQLTEAARPILRGEMTLSLATPRQNLSMINHAHHYQAQQGDRELFNQLRKLRKQLSDRDNIPP
YAVFNDATLEEMAREIPTTLSEMLQINGVGFKKLERYAQPFLAVILRYLENKK

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=683595 OLL86_RS07465 WP_264779776.1 1583963..1585804(-) (recQ) [Gallibacterium anatis strain IMT49310]
ATGTGTTCTAATTCAGAAGATCAGGCTGAGGCGTTATCGCCTGATCTTATCCGTGCAAAATCCATTCTTCAGGACGTTTT
TGGTTATCAGCAATTCCGTCAAGGGCAGCAACAGATTATTGCCGCGACATTACAAGGTCAAAGCAGCTTTATTCTGATGG
CGACCGGTGGCGGCAAATCGCTTTGTTATCAAATACCGGCACTTTGTTTTCCCGGATTGACGCTTGTAGTTTCCCCTTTG
ATCGCTTTAATGCAGGATCAAGTCGATCAACTGACCGCAAACGGCGTGGCAGCAGCTTATCTGAATTCAAGTCAAACTTT
GGAACAGCAACGAGAAATTGAACAACAGGCGTTATCCGGAAAATTGAAATTGCTCTATATTTCGCCGGAAAAAGTGATGA
CTACGGCGTTTTTCTATTTTATTCAGCAGTGTCAGGTGAGTTTTATTGCAATTGATGAAGCCCATTGTATTTCTCAATGG
GGACACGATTTTCGTCCGGAATATTCACAGCTACGCAGTTTAACGCGTGTTTTTCCCCACATTCCGATTATGGCACTAAC
CGCAACGGCAGATCGCGTTACTCGAGAAGACATTCTGGAATTGCTTAATTTACAGCAACCCTTTGTTTATATTGGGAGTT
TTGATAGACCCAATATCCGTTATACCGTAGTGGAAAAATTTAAACCGCAAGAACAGTTGCTTAAATTTGTCAAATCGCAA
AAAGGTAAGAGTGGCATTATTTACGCCAACAGCCGTAACAAAGTGGAAAGATTGGCGGAAATGTTGCAGCGTAAAGGGAT
TTCCGCAAAGGCGTATCACGCCGGTTTTAGCAATGAAATCAGGGAGCAGGTTCAACACGATTTCCAACGTGACAATATCC
AAATTATTGTTGCCACCATTGCATTCGGAATGGGCATTAATAAACCGAATATCCGTTTTGTGTTGCATTATGATCTGCCG
AGAAGTATTGAGGCCTATTATCAGGAAACCGGTCGGGCAGGGCGTGATGATCTGCCGGCGGAAGCGGTGCTGTTTTATGA
TCATCAAGATTATTTGTGGTTGAATAAATTATTGCAGGAAAAACCCGATTCATCACAAAAAATGATTGAACAGCATAAAT
TGCAAGCAATGGGCGAATTTGCCGAAGCACAAACTTGTCGCCGCTTGGTGTTACTGAATTATTTTGCCGAACATCGCCAT
CAACCTTGCAATAACTGCGATATTTGCCTTAACCCACCGAAAAAATATGATGGTTTGATTGATGCGCAAAAAATCCTTTC
TACAGTTTATCGTACCGGACAAAAATTCGGTAGTTATTATGTGATTGCAGTGTTGCGAGGCGTGCAAAATCAGAAAATTC
AAGAATTACAACATGATAAATTATCTGTTTTTGGTATCGGCAAGGATAAATCACAAGAGTATTGGCACAGTGTGATCCGT
CAATTAATTCATTTAGGTTTTTTAAGCCAAAATATTGCCAATTATTCGGCGCTTCAGCTTACTGAGGCAGCCAGACCGAT
TTTGCGCGGAGAAATGACGTTATCATTAGCAACCCCACGACAAAATCTTTCAATGATTAACCACGCCCATCACTATCAAG
CACAACAGGGCGATCGGGAACTCTTTAATCAATTACGCAAATTAAGAAAACAACTCTCCGATCGGGATAATATTCCGCCT
TATGCGGTATTTAATGATGCCACTTTAGAAGAGATGGCGCGAGAAATTCCGACAACACTTTCAGAAATGCTGCAAATCAA
TGGTGTAGGTTTCAAAAAATTAGAACGTTATGCTCAACCGTTTTTGGCGGTGATTTTGCGTTATTTAGAAAACAAAAAAT
AA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(539-605)

DEAD/DEAH box helicase (DEAD)

(35-192)

Helicase conserved C-terminal domain (Helicase_C)

(232-335)

RecQ zinc-binding (RecQ_Zn_bind)

(349-410)

RQC domain (RQC)

(412-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.479

97.064

0.364