Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OLL86_RS07445 Genome accession   NZ_CP110225
Coordinates   1579300..1580295 (+) Length   331 a.a.
NCBI ID   WP_264779774.1    Uniprot ID   -
Organism   Gallibacterium anatis strain IMT49310     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1574300..1585295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLL86_RS07420 (OLL86_07420) rbsD 1574435..1574854 (+) 420 WP_264779770.1 D-ribose pyranase -
  OLL86_RS07425 (OLL86_07425) rbsA 1574867..1576354 (+) 1488 WP_264779771.1 ribose ABC transporter ATP-binding protein RbsA -
  OLL86_RS07430 (OLL86_07430) rbsC 1576369..1577343 (+) 975 WP_013746309.1 ribose ABC transporter permease -
  OLL86_RS07435 (OLL86_07435) rbsB 1577379..1578257 (+) 879 WP_264779772.1 ribose ABC transporter substrate-binding protein RbsB -
  OLL86_RS07440 (OLL86_07440) rbsK 1578342..1579262 (+) 921 WP_264779773.1 ribokinase -
  OLL86_RS07445 (OLL86_07445) cytR 1579300..1580295 (+) 996 WP_264779774.1 substrate-binding domain-containing protein Regulator
  OLL86_RS07450 (OLL86_07450) - 1580429..1581463 (+) 1035 WP_013746313.1 TAXI family TRAP transporter solute-binding subunit -
  OLL86_RS07455 (OLL86_07455) - 1581466..1581960 (+) 495 WP_039137650.1 DUF1850 domain-containing protein -
  OLL86_RS07460 (OLL86_07460) - 1581929..1583905 (+) 1977 WP_264779775.1 TRAP transporter permease -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 37303.08 Da        Isoelectric Point: 6.9742

>NTDB_id=683594 OLL86_RS07445 WP_264779774.1 1579300..1580295(+) (cytR) [Gallibacterium anatis strain IMT49310]
MATMKDIARIAKVSTSTVSHVINNTRYVSDEIREKIMKVVNELNYTPSAVARSLKVKETKTLGMLVTATSNPFFAEVVSG
VEQYCNQHHYNLIISSIDGNEQRLQQNIQTLIQKQVDGLLLMYSDTRHAMVEQLNLNLPIVVMDWWPTELNADKIYENSE
FGAYLATKTLIEQGHKNIAIITGKLDKSLAHNRLLGYQKALQDAHLPINSDWIIESHFDFEGGVEGMKKLLQITPRPTAV
FACSDTIAVGVYQVAWQQGLRIPQDISVIGYDNIMLAQYLTPPLTTIHQPKAELGKLAVETLLERIKSPDLEYKTTMLQP
QLIWRASIAKI

Nucleotide


Download         Length: 996 bp        

>NTDB_id=683594 OLL86_RS07445 WP_264779774.1 1579300..1580295(+) (cytR) [Gallibacterium anatis strain IMT49310]
ATGGCAACAATGAAGGATATTGCACGGATAGCGAAAGTTTCAACTTCAACCGTATCACACGTAATCAACAATACACGTTA
TGTCAGTGATGAGATACGTGAAAAAATTATGAAGGTTGTCAATGAGTTAAATTATACCCCTTCCGCTGTTGCCCGCAGTT
TAAAAGTAAAAGAGACAAAAACATTGGGAATGTTGGTTACTGCCACCAGCAATCCGTTTTTCGCCGAAGTAGTGAGCGGT
GTGGAACAATATTGCAATCAGCACCACTACAACTTGATCATTTCCAGTATCGATGGCAACGAACAACGCTTGCAGCAGAA
TATTCAAACTTTAATTCAAAAACAGGTGGACGGATTGCTGTTAATGTATTCCGACACTCGCCACGCAATGGTGGAACAGT
TAAATCTAAATTTGCCGATTGTGGTAATGGACTGGTGGCCGACCGAACTAAATGCCGATAAAATTTATGAAAATTCAGAA
TTTGGTGCTTATCTTGCCACAAAAACCTTAATTGAGCAGGGACATAAAAATATCGCTATTATTACGGGTAAATTGGATAA
ATCCTTAGCTCACAACCGTTTGCTCGGTTACCAAAAAGCGTTGCAGGATGCGCATTTGCCGATCAACTCTGATTGGATCA
TTGAAAGCCATTTTGATTTTGAAGGTGGCGTAGAGGGGATGAAAAAATTGTTACAGATTACGCCTCGCCCTACAGCCGTT
TTCGCCTGTAGCGACACCATTGCGGTCGGCGTTTATCAAGTGGCTTGGCAACAAGGATTACGCATTCCGCAAGATATTTC
TGTCATCGGTTACGACAATATTATGTTGGCGCAATATCTCACCCCACCGCTAACCACAATTCATCAACCTAAAGCAGAAT
TGGGCAAATTAGCAGTGGAAACCTTATTGGAAAGGATTAAATCGCCGGATCTGGAATATAAAACCACAATGTTACAGCCA
CAATTAATTTGGCGTGCTTCAATCGCTAAAATTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.446

100

0.366
  cytR Vibrio parahaemolyticus RIMD 2210633

36.364

99.698

0.363