Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   OLL86_RS01925 Genome accession   NZ_CP110225
Coordinates   422395..422955 (-) Length   186 a.a.
NCBI ID   WP_013745261.1    Uniprot ID   -
Organism   Gallibacterium anatis strain IMT49310     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 417395..427955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLL86_RS01905 (OLL86_01905) - 418101..418721 (-) 621 WP_039081190.1 tetratricopeptide repeat protein -
  OLL86_RS01910 (OLL86_01910) hisS 418733..420016 (-) 1284 WP_039092909.1 histidine--tRNA ligase -
  OLL86_RS01915 (OLL86_01915) ispG 420038..421153 (-) 1116 WP_018347055.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  OLL86_RS01920 (OLL86_01920) - 421178..422251 (-) 1074 WP_264780202.1 RodZ domain-containing protein -
  OLL86_RS01925 (OLL86_01925) pilF 422395..422955 (-) 561 WP_013745261.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  OLL86_RS01930 (OLL86_01930) - 422976..424094 (-) 1119 WP_021462407.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  OLL86_RS01935 (OLL86_01935) folD 424413..425276 (-) 864 WP_013745259.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  OLL86_RS01950 (OLL86_01950) - 425798..426124 (-) 327 WP_039083485.1 HigA family addiction module antitoxin -
  OLL86_RS01955 (OLL86_01955) - 426134..426412 (-) 279 WP_039083486.1 type II toxin-antitoxin system RelE/ParE family toxin -
  OLL86_RS01960 (OLL86_01960) udk 426726..427382 (+) 657 WP_013745255.1 uridine kinase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20953.95 Da        Isoelectric Point: 9.3348

>NTDB_id=683573 OLL86_RS01925 WP_013745261.1 422395..422955(-) (pilF) [Gallibacterium anatis strain IMT49310]
MNKTMIKLKFFILLSSLFTLFACSHSVSNKPLSANAAAAKTRVELGLAYLSQGNPALAKANLDKALQHTPNDYLPYLGLA
YFYQHTQQLKLAGEYYQKALSLSPENGDVLNNYATYLCSQRQFDMAFNFFEQALNSKAYYHFADTYENIAICAVLAGDQN
KTEQALTQLEKYSVGKAKNLRQRLHK

Nucleotide


Download         Length: 561 bp        

>NTDB_id=683573 OLL86_RS01925 WP_013745261.1 422395..422955(-) (pilF) [Gallibacterium anatis strain IMT49310]
ATGAACAAAACAATGATTAAACTGAAATTTTTTATTCTGCTTTCCTCACTGTTTACGCTTTTTGCCTGTAGCCATTCAGT
TAGCAATAAACCGCTTTCCGCTAATGCTGCTGCGGCAAAAACGCGTGTTGAGTTAGGGTTGGCTTATTTGTCGCAAGGCA
ATCCGGCATTGGCAAAAGCCAATTTAGATAAAGCGTTGCAACATACACCGAATGATTATTTGCCTTATCTAGGTTTGGCT
TATTTTTATCAACATACCCAACAACTCAAACTTGCCGGCGAATATTATCAAAAAGCGCTCTCTCTTTCGCCCGAGAATGG
CGATGTATTGAATAATTATGCAACTTACCTCTGCTCTCAACGCCAATTTGATATGGCATTTAACTTTTTTGAACAAGCAT
TAAACAGCAAAGCCTATTATCATTTTGCCGATACTTATGAAAACATTGCGATTTGCGCTGTTTTAGCCGGTGATCAAAAC
AAAACTGAACAAGCTTTAACCCAACTGGAGAAATATTCTGTCGGTAAAGCGAAAAATTTGCGGCAACGTTTGCATAAATA
A

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_8)

(40-68)

Tetratricopeptide repeat (TPR_17)

(96-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Glaesserella parasuis strain SC1401

44.809

98.387

0.441
  pilF/pilF2 Haemophilus influenzae Rd KW20

46.988

89.247

0.419