Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   M1S39_RS01610 Genome accession   NZ_CP096738
Coordinates   342662..343480 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 5679     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337662..348480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1S39_RS01575 (M1S39_01575) - 338245..338374 (-) 130 Protein_300 hypothetical protein -
  M1S39_RS01580 (M1S39_01580) rpoZ 338413..338691 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  M1S39_RS01585 (M1S39_01585) gmk 338764..339393 (-) 630 WP_000015937.1 guanylate kinase -
  M1S39_RS01590 (M1S39_01590) ispH 339516..340466 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M1S39_RS01595 (M1S39_01595) fimU 340636..341109 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  M1S39_RS01600 (M1S39_01600) pilV 341103..341663 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  M1S39_RS01605 (M1S39_01605) pilW 341664..342665 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  M1S39_RS01610 (M1S39_01610) pilX 342662..343480 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  M1S39_RS01615 (M1S39_01615) pilY1 343492..347346 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  M1S39_RS01620 (M1S39_01620) pilY2 347359..347841 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  M1S39_RS01625 (M1S39_01625) pilE 347838..348263 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=683485 M1S39_RS01610 WP_000149374.1 342662..343480(+) (pilX) [Acinetobacter baumannii strain 5679]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=683485 M1S39_RS01610 WP_000149374.1 342662..343480(+) (pilX) [Acinetobacter baumannii strain 5679]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993