Detailed information NTG0683483

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OMP51_RS06755
• Genome accession: NZ_CP110190
• Coordinates: 1440983..1441987 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain HS204
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1435983..1446987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OMP51_RS06725 (OMP51_06725)	fghA	1436075..1436926 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
OMP51_RS06730 (OMP51_06730)	ispF	1436997..1437470 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OMP51_RS06735 (OMP51_06735)	truD	1437467..1438534 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
OMP51_RS06740 (OMP51_06740)	surE	1438522..1439271 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
OMP51_RS06745 (OMP51_06745)	-	1439304..1439939 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OMP51_RS06750 (OMP51_06750)	-	1439985..1440878 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
OMP51_RS06755 (OMP51_06755)	rpoS	1440983..1441987 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
OMP51_RS06760 (OMP51_06760)	fdxA	1442414..1442737 (-)	324	WP_003092272.1	ferredoxin FdxA	-
OMP51_RS06765 (OMP51_06765)	mutS	1442804..1445344 (-)	2541	WP_003163273.1	DNA mismatch repair protein MutS	-
OMP51_RS06770 (OMP51_06770)	-	1445599..1446699 (+)	1101	WP_071540874.1	hypothetical protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=683483 OMP51_RS06755 WP_003113871.1 1440983..1441987(+) (rpoS) [Pseudomonas aeruginosa strain HS204]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=683483 OMP51_RS06755 WP_003113871.1 1440983..1441987(+) (rpoS) [Pseudomonas aeruginosa strain HS204]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653