Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   M1S39_RS01600 Genome accession   NZ_CP096738
Coordinates   341103..341663 (+) Length   186 a.a.
NCBI ID   WP_085916952.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 5679     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336103..346663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1S39_RS01575 (M1S39_01575) - 338245..338374 (-) 130 Protein_300 hypothetical protein -
  M1S39_RS01580 (M1S39_01580) rpoZ 338413..338691 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  M1S39_RS01585 (M1S39_01585) gmk 338764..339393 (-) 630 WP_000015937.1 guanylate kinase -
  M1S39_RS01590 (M1S39_01590) ispH 339516..340466 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M1S39_RS01595 (M1S39_01595) fimU 340636..341109 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  M1S39_RS01600 (M1S39_01600) pilV 341103..341663 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  M1S39_RS01605 (M1S39_01605) pilW 341664..342665 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  M1S39_RS01610 (M1S39_01610) pilX 342662..343480 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20190.13 Da        Isoelectric Point: 8.2254

>NTDB_id=683483 M1S39_RS01600 WP_085916952.1 341103..341663(+) (pilV) [Acinetobacter baumannii strain 5679]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGRTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=683483 M1S39_RS01600 WP_085916952.1 341103..341663(+) (pilV) [Acinetobacter baumannii strain 5679]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAGAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

99.462

100

0.995
  pilV Acinetobacter baylyi ADP1

40.86

100

0.409