Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OFY13_RS09870 Genome accession   NZ_CP110188
Coordinates   2183207..2184871 (+) Length   554 a.a.
NCBI ID   WP_085604439.1    Uniprot ID   -
Organism   Vibrio cholerae strain E1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2178207..2189871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY13_RS09850 (OFY13_09850) dnaK 2179274..2181181 (-) 1908 WP_000516147.1 molecular chaperone DnaK -
  OFY13_RS09855 (OFY13_09855) - 2181339..2181452 (+) 114 WP_228006377.1 transporter -
  OFY13_RS09860 (OFY13_09860) grpE 2181445..2182047 (-) 603 WP_000064037.1 nucleotide exchange factor GrpE -
  OFY13_RS09865 (OFY13_09865) nadK 2182193..2183077 (+) 885 WP_000742830.1 NAD(+) kinase -
  OFY13_RS09870 (OFY13_09870) recN 2183207..2184871 (+) 1665 WP_085604439.1 DNA repair protein RecN Machinery gene
  OFY13_RS09875 (OFY13_09875) bamE 2185030..2185389 (+) 360 WP_001160907.1 outer membrane protein assembly factor BamE -
  OFY13_RS09880 (OFY13_09880) - 2185468..2185773 (-) 306 WP_001929603.1 RnfH family protein -
  OFY13_RS09885 (OFY13_09885) - 2185776..2186210 (-) 435 WP_000815880.1 SRPBCC family protein -
  OFY13_RS09890 (OFY13_09890) smpB 2186394..2186879 (+) 486 WP_000162689.1 SsrA-binding protein SmpB -
  OFY13_RS09900 (OFY13_09900) - 2187676..2189037 (+) 1362 WP_142993673.1 type II toxin-antitoxin system HipA family toxin -
  OFY13_RS09905 (OFY13_09905) - 2189034..2189501 (+) 468 WP_046127336.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 61236.96 Da        Isoelectric Point: 5.5765

>NTDB_id=683435 OFY13_RS09870 WP_085604439.1 2183207..2184871(+) (recN) [Vibrio cholerae strain E1]
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEQKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVLQD
SAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=683435 OFY13_RS09870 WP_085604439.1 2183207..2184871(+) (recN) [Vibrio cholerae strain E1]
ATGCTGGCTCACTTAAGTATCAATAACTTCGCTATCGTAAAGTCACTACAACTCGAATTATCAAAAGGAATGACCACCAT
CACCGGTGAAACTGGTGCTGGTAAATCCATTGCGATTGATGCTTTAGGTTTATGCCTTGGTGGTCGAGCCGAAGCCAGCA
TGGTGCGTCAAGGTGAAGATAAAACCGAAGTCAGCGCCGCCTTTCATCTGGATAACAATCTGCTCGCTAGCCGTTGGTTA
GAAGATAATGAACTGCTTGAAGGCAAAGAGTGCATTCTGCGCCGAATCATCACCAAAGATGGGCGCTCTAAAGCCTTTAT
TAATGGCAGCCCAGTTCCGCTCTCTCAACTCAAAACATTGGGGCAACTGCTGATCAATGTGCATGGTCAACACGCACATC
AGCAACTGATGAAACCGGAATATCAGCTCAGCATGCTTGATCAATACGCAGGTCATGCAGACTTGCTCAAAGCCACGCGT
CACGCCTATCAAAATTGGCGTCAAGCGAGCAATCAGCTCAAACAGCTGCGCGAAAATAGCCAACAAAATCAGGCACAATT
ACAACTTTTGGAATACCAAATCAAAGAGCTCAACGAATTGGCTCTCGGTGAGGATGAGTTTGTCGAGCTAGAACAAGAGC
AAAAACGCTTAGCCAATAGCGGCGATCTGGCACTCAACTGCCAACGCGCGATTGAACTGCTCAATGAAGGGGAAGAAGTA
AACGCCTTAGGCCTTTTACAAAGTGTTAGCCATACGCTGATTGATCTGGCTGAAATGGATAGCAAACTGACAGCGCTCCC
TTCAATGGTGGCCGAAGCGCTGATCCAACTTGAAGAGACTTACCATGAACTGCGCAACTACTTGGATTCGATTGATGTCG
ACCCAGAACGCATGGCGTATGTAGAAGAGCGCTACTCCAAAGTCATGTCGCTCGCGCGTAAACATCATGTACTGCCAGAA
GAGCTGTATCAGCATCACCAAGCACTCTTGCAGCAAATTGCTCAGCTAGATTGTTCTGATGAGAAAATGTCAGCACTCGC
GAGTGAAGTCGACGTGCTCTACCAAACCTTTGTTGCGGCCGCTGACAAACTGCACAAATCTCGTGTTCGCTATGCCAAAG
AATTGGATAAATTGATTAGCCAAAGCATGCATGAGCTGAGCATGGAAAAAGCGCAATTCAAAATCGAAGTGCTGCAAGAC
AGCGCGCACTCATCGCCATTAGGTTTTGATGCCGTGACTTTCTTAGTCTCGACGAACCCGGGTCAACCGCTGCAACCCAT
CGCCAAAGTGGCCTCTGGTGGTGAACTGTCACGGATGTCATTGGCGATCCAAGTGATTACTGCGCAAAAAGTCGATACTC
CAAGCCTGATTTTTGATGAAGTTGACGTGGGTATTTCAGGGCCAACAGCAGCCGTAGTTGGCAAACTACTGCGCAAATTG
GGCGAGTCGACTCAAGTACTGTGTGTCACCCACTTACCGCAAGTGGCAGGTTGCGGACACCATCAACTGTTTGTCGCCAA
ACAGACCAAAGCAGGCAAAACCGAAACGCAAATGCTCAAACTGGATCAAGAACAGCGCATTGCTGAACTTGCACGCTTGC
TCGGAGGGAGCCAAATTACCGAATCCACGCTCGCGAATGCTAAAGAGCTATTAATCGCAGCCTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

37.123

100

0.377
  recN Bacillus subtilis subsp. subtilis str. 168

35.192

100

0.365