Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OFY13_RS08040 Genome accession   NZ_CP110188
Coordinates   1781445..1782089 (-) Length   214 a.a.
NCBI ID   WP_001890391.1    Uniprot ID   Q9KSP3
Organism   Vibrio cholerae strain E1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1776445..1787089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY13_RS08005 (OFY13_08005) tnpA 1777771..1778208 (-) 438 WP_000503164.1 IS200/IS605-like element IS1004 family transposase -
  OFY13_RS08030 (OFY13_08030) pgsA 1779008..1779565 (-) 558 WP_001211977.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OFY13_RS08035 (OFY13_08035) uvrC 1779613..1781445 (-) 1833 WP_032467873.1 excinuclease ABC subunit UvrC -
  OFY13_RS08040 (OFY13_08040) letA 1781445..1782089 (-) 645 WP_001890391.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  OFY13_RS08045 (OFY13_08045) - 1782465..1784828 (+) 2364 WP_000687825.1 DNA polymerase II -
  OFY13_RS08050 (OFY13_08050) - 1784800..1786899 (-) 2100 WP_025998894.1 PTS sugar transporter subunit IIC/EAL domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23751.50 Da        Isoelectric Point: 6.4970

>NTDB_id=683424 OFY13_RS08040 WP_001890391.1 1781445..1782089(-) (letA) [Vibrio cholerae strain E1]
MISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRTNHADVILMDMNMPGIGGLEATKKLLRVNPDIKIIV
LTVHTENPFPTKVMQAGAAGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASENPFADLSERELQIMLMI
TKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGILDTEKL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=683424 OFY13_RS08040 WP_001890391.1 1781445..1782089(-) (letA) [Vibrio cholerae strain E1]
TTGATTAGTGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAAAGTAGCAGGGGAAGCTGACAGCGGTGAAGAAGCAGTAAAATGGTGCCGTACTAACCATGCGGATGTCATTTTAATGG
ATATGAACATGCCGGGTATTGGTGGCTTGGAAGCAACCAAGAAGCTGTTGCGTGTTAATCCGGACATTAAAATTATCGTA
TTGACGGTACATACCGAAAATCCGTTCCCAACCAAAGTGATGCAAGCGGGTGCCGCAGGTTATCTCACGAAGGGCGCGGC
ACCGGATGAAATGGTCAATGCGATCCGTATCGTTCACAGCGGTCAGCGTTACATTTCTCCAGAAATTGCGCAGCAAATGG
CGTTGAGTCAGTTTTCGCCCGCCTCTGAAAATCCTTTTGCTGATCTCTCCGAACGTGAATTGCAGATCATGTTAATGATC
ACCAAAGGCCAGAAGGTGACGGACATTTCCGAACAGCTCAGTTTGAGCCCGAAAACCGTCAACAGCTACCGCTACCGTTT
GTTCGCCAAGCTGAATATCAACGGTGATGTGGAATTAACCCACTTAGCTATCCGACACGGGATCTTAGATACTGAGAAGT
TATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KSP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.905

98.131

0.509
  letA Legionella pneumophila strain ERS1305867

51.905

98.131

0.509