Detailed information NTG0683378

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: NOV96_RS10880
• Genome accession: NZ_CP110141
• Coordinates: 2207770..2208864 (+)
• Length: 364 a.a.
• NCBI ID: WP_002936177.1
• Uniprot ID: -
• Organism: Streptococcus suis strain WUSS030
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2202770..2213864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NOV96_RS10855 (NOV96_10855)	pgsA	2203289..2203828 (-)	540	WP_013730677.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
NOV96_RS10860 (NOV96_10860)	rodZ	2203838..2204695 (-)	858	WP_002939074.1	cytoskeleton protein RodZ	-
NOV96_RS10865 (NOV96_10865)	yfmH	2204777..2206060 (-)	1284	WP_002939071.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
NOV96_RS10870 (NOV96_10870)	yfmF	2206057..2207310 (-)	1254	WP_009911054.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
NOV96_RS10875 (NOV96_10875)	yaaA	2207384..2207767 (+)	384	WP_002936175.1	S4 domain-containing protein YaaA	-
NOV96_RS10880 (NOV96_10880)	recF	2207770..2208864 (+)	1095	WP_002936177.1	DNA replication/repair protein RecF	Machinery gene
NOV96_RS10885 (NOV96_10885)	-	2209305..2210507 (-)	1203	WP_002935596.1	IS110 family transposase	-
NOV96_RS10890 (NOV96_10890)	guaB	2210757..2212238 (-)	1482	WP_014637236.1	IMP dehydrogenase	-
NOV96_RS10895 (NOV96_10895)	trpS	2212470..2213495 (-)	1026	WP_013730696.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42217.34 Da
• Isoelectric Point: 7.2235

>NTDB_id=683378 NOV96_RS10880 WP_002936177.1 2207770..2208864(+) (recF) [Streptococcus suis strain WUSS030]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=683378 NOV96_RS10880 WP_002936177.1 2207770..2208864(+) (recF) [Streptococcus suis strain WUSS030]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATCAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.083	99.176	0.695
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442