Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   NOV96_RS06700 Genome accession   NZ_CP110141
Coordinates   1329927..1331711 (-) Length   594 a.a.
NCBI ID   WP_014636916.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS030     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1324927..1336711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOV96_RS06685 (NOV96_06685) - 1327686..1327850 (-) 165 WP_002935476.1 hypothetical protein -
  NOV96_RS06690 (NOV96_06690) obgE 1328224..1329537 (-) 1314 WP_002935475.1 GTPase ObgE -
  NOV96_RS06695 (NOV96_06695) - 1329742..1329870 (-) 129 WP_002935474.1 DUF4044 domain-containing protein -
  NOV96_RS06700 (NOV96_06700) uvrC 1329927..1331711 (-) 1785 WP_014636916.1 excinuclease ABC subunit UvrC Machinery gene
  NOV96_RS06705 (NOV96_06705) - 1331951..1332694 (+) 744 WP_002935470.1 ABC transporter ATP-binding protein -
  NOV96_RS06710 (NOV96_06710) - 1332691..1334301 (+) 1611 WP_002935469.1 hypothetical protein -
  NOV96_RS06715 (NOV96_06715) - 1334329..1334772 (-) 444 WP_002935466.1 VOC family protein -
  NOV96_RS06720 (NOV96_06720) ldcB 1334861..1335616 (-) 756 WP_002935465.1 LD-carboxypeptidase LdcB/DacB -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 68281.36 Da        Isoelectric Point: 8.6452

>NTDB_id=683346 NOV96_RS06700 WP_014636916.1 1329927..1331711(-) (uvrC) [Streptococcus suis strain WUSS030]
MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDTKTEALVSEIADFEFIVTDSNIEALLLEIN
LIQENKPRYNIMLKDDKSYPFIKITKERHPRLLITRQIKKDSGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
YYHLGQCLAHGENLPSLSDYDKMAKEVAQFLTGHDDKIVKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAH
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEAL
VDTKVIKPQRGEKKQLINLATKNARVSLEQKFNLLEKNLEKTYGAVENIGQLLGIPTPVRIEAFDNSNIMGTSPVSAMVV
FENGVPNKKEYRKYKIKTVEGPDDYASMREVLQRRYSRVLRDDLTPPDLIIIDGGQGQVNVAKQVIEQELGMSIPIAGLQ
KNDKHQTHELLFGNPLEVVELPRNSQEFFLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSI
GNIQSASLQEIAEAGVPYKVAELVKENLSSKDEI

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=683346 NOV96_RS06700 WP_014636916.1 1329927..1331711(-) (uvrC) [Streptococcus suis strain WUSS030]
ATGAACGATTTGATAAAGCATAAGTTGGAGTTGCTGCCGGACAGTCCGGGTTGCTACCTCCATAAAAACAAGTACGGTAA
GATTATCTATGTGGGCAAGGCCAAAAACCTGCGCAATCGGGTGCGGTCTTATTTTCGTGGTGCCCATGATACCAAGACAG
AGGCCTTAGTATCTGAAATTGCCGACTTTGAATTCATCGTAACGGATTCTAATATCGAGGCGCTCTTGTTGGAAATCAAT
CTGATTCAGGAAAACAAGCCTCGCTATAACATCATGCTCAAGGATGACAAGTCCTATCCCTTTATCAAGATTACCAAGGA
ACGTCATCCACGGCTGCTCATTACACGGCAAATTAAGAAGGATAGCGGTCAGTATTTTGGTCCCTATCCAGATGTGGGTG
CGGCCAACCAGACCCTCAAACTATTGGAGCGCCTCTATCCTTTCCGCAAGTGTAAATTGCCTGAGAACAAGTATTGTCTT
TATTATCATTTGGGGCAATGTTTGGCTCACGGGGAAAACCTGCCCAGCCTGTCTGACTATGATAAGATGGCCAAGGAAGT
GGCCCAGTTCTTGACGGGTCATGATGATAAGATTGTCAAGGAAGTGCAGGACAAGATGAAGGCGGCTGCTGGCAATTTGG
AATTTGAAAAGGCTGCGGAATATCGTGATGTCCTTCAATCCATTTCAACCCTACGGACCAAGCAACGAGTGATGGCTCAT
GACTTGCAAAACCGCGATGTCTTTGGTTATTATGTAGACAAGGGCTGGATGTGTGTGCAGGTTTTCTTTGTTCGGCAGGG
GAAACTGATTGAGCGGAATGTCAATCTTTTTCCATATTATAATGATGCGGACGAAGACTTTTTGACCTACATCGGTCAGT
TTTACAGGGACCAGCAACATTTGATTCCCTCTGAGGTCTTGATACCGCAGGATATTGACCAAGAAGCCGTAGAAGCTCTG
GTAGATACCAAGGTCATCAAGCCTCAGCGTGGCGAGAAGAAGCAACTCATCAATCTGGCAACCAAGAATGCGCGTGTTAG
TCTGGAGCAGAAGTTTAATCTCCTGGAGAAAAATCTGGAGAAGACTTACGGTGCAGTGGAGAATATCGGTCAGTTGCTGG
GGATTCCGACGCCTGTGCGGATTGAGGCCTTTGACAACTCCAACATCATGGGCACCAGCCCTGTGTCGGCTATGGTGGTC
TTTGAAAATGGGGTGCCTAATAAAAAAGAATACCGCAAGTACAAGATTAAGACGGTTGAGGGGCCAGATGATTATGCCTC
TATGCGTGAAGTGCTGCAACGCCGTTATAGTCGGGTCTTGAGGGACGATTTGACACCGCCTGATTTGATTATCATTGACG
GAGGTCAGGGGCAGGTCAATGTCGCCAAGCAGGTCATCGAGCAGGAGTTGGGTATGTCCATTCCCATTGCAGGTTTGCAG
AAGAATGACAAGCACCAAACCCACGAATTGCTCTTTGGCAATCCGCTGGAAGTGGTGGAGTTGCCACGTAATTCTCAGGA
ATTTTTCCTCCTGCATCGGATTCAAGATGAGGTTCACCGCTTTGCTATTGAATTTCATCGTCAGGTTCGGTCAAAAAATT
CCTTCTCATCTAAATTGGACGGCATAGAAGGTTTGGGACCAAAACGCAAACAGGCTTTGATGAAGCATTTCAAGTCTATT
GGCAATATCCAGTCGGCCAGTCTACAAGAAATCGCAGAAGCAGGTGTGCCGTATAAGGTGGCGGAGTTGGTCAAGGAAAA
CCTTTCTTCAAAGGATGAGATTTGA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrB/uvrC motif (UVR)

(196-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

76.897

99.832

0.768
  uvrC Streptococcus pneumoniae R6

76.56

99.832

0.764
  uvrC Streptococcus pneumoniae D39

76.56

99.832

0.764