Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SNAG_RS00405 Genome accession   NZ_AP017652
Coordinates   63167..64531 (+) Length   454 a.a.
NCBI ID   WP_172842411.1    Uniprot ID   -
Organism   Streptococcus sp. NPS 308     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 58167..69531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS00360 (SNAG_0073) - 58998..59207 (+) 210 WP_096405733.1 hypothetical protein -
  SNAG_RS00365 (SNAG_0074) - 59197..59784 (+) 588 WP_096405735.1 hypothetical protein -
  SNAG_RS00370 (SNAG_0075) - 59795..60235 (+) 441 WP_096405737.1 hypothetical protein -
  SNAG_RS00375 (SNAG_0076) - 60219..60551 (+) 333 WP_096405739.1 phage holin -
  SNAG_RS00380 (SNAG_0077) - 60554..61420 (+) 867 WP_096405741.1 CHAP domain-containing protein -
  SNAG_RS00390 (SNAG_0078) - 61750..62022 (+) 273 WP_096405745.1 hypothetical protein -
  SNAG_RS00395 (SNAG_0079) - 62196..62639 (+) 444 WP_096405746.1 dUTP diphosphatase -
  SNAG_RS00400 (SNAG_0080) - 62641..63156 (+) 516 WP_172842364.1 histidine phosphatase family protein -
  SNAG_RS00405 (SNAG_0081) radA 63167..64531 (+) 1365 WP_172842411.1 DNA repair protein RadA Machinery gene
  SNAG_RS00410 (SNAG_0082) - 64604..65098 (+) 495 WP_172842365.1 carbonic anhydrase -
  SNAG_RS00415 (SNAG_0083) - 65313..66281 (+) 969 WP_000010178.1 ribose-phosphate diphosphokinase -
  SNAG_RS00420 (SNAG_0084) - 66402..66839 (+) 438 WP_049538209.1 CoA-binding protein -
  SNAG_RS00425 (SNAG_0085) - 66866..67876 (-) 1011 WP_096405753.1 YeiH family protein -
  SNAG_RS00430 (SNAG_0086) - 68027..69196 (+) 1170 WP_096405755.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49612.17 Da        Isoelectric Point: 5.8716

>NTDB_id=68315 SNAG_RS00405 WP_172842411.1 63167..64531(+) (radA) [Streptococcus sp. NPS 308]
MIAKKKATFVCQNCEYNSPKYLGRCPNCGAWSSFVEEIEVVEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEV
ERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGE
RHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTIFGNA
KRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEI
RRVNRIEQRINEAAKLGFTKIYVPKNSLTGIKPPQEIQAIGVTTIQEVLKMVFA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=68315 SNAG_RS00405 WP_172842411.1 63167..64531(+) (radA) [Streptococcus sp. NPS 308]
ATTATCGCAAAGAAAAAGGCGACATTTGTGTGTCAAAATTGTGAATATAATTCACCTAAGTATCTAGGACGCTGTCCAAA
CTGTGGAGCTTGGTCTTCTTTTGTAGAAGAGATCGAGGTTGTCGAGGTCAAAAATGCGCGTGTGTCTTTGACAGGTGAAA
AAACCAAGCCTATGAAACTGGCTGAAGTAACGTCTATCAATGTCAATAGAACCAAGACCGAGATGGAGGAATTTAACCGT
GTACTTGGAGGCGGAGTGGTACCAGGGAGTCTCGTACTTATTGGGGGAGATCCTGGAATCGGGAAATCAACGCTTCTTTT
ACAAGTTTCAACCCAGTTGTCTCAAGTGGGTACGGTTCTCTACGTCAGTGGGGAGGAGTCTGCCCAGCAAATCAAGCTAC
GAGCAGAGCGATTGGGGGATATTGATAGTGAGTTTTATCTCTACGCCGAGACCAATATGCAGAGTGTTCGAGCTGAGGTA
GAGCGCATCCAACCAGATTTTCTCATCATTGACTCTATACAAACTATTATGTCTCCTGAGATTTCAGGGGTGCAAGGGTC
TGTGTCTCAGGTGCGAGAGGTGACAGCTGAGCTTATGCAGCTGGCCAAGACCAATAACATTGCCATCTTTATCGTAGGGC
ATGTGACCAAGGAAGGGACCTTAGCAGGTCCGCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAG
CGTCACCATACCTTCCGAATCTTACGAGCGGTCAAAAACCGTTTTGGCTCGACCAATGAGATTGGCATTTTTGAGATGCA
ATCAGGTGGCTTGGTTGAGGTGCTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGATGGGGCCACTGGTTCATCAA
TCGTGGTAACTATGGAAGGGACACGTCCGATTTTGGCGGAGGTTCAAGCCTTGGTGACACCGACCATATTTGGAAATGCC
AAGCGTACGACGACAGGGCTTGACTTCAATCGTGCTAGTTTGATTATGGCTGTTTTGGAAAAACGTGCAGGGCTTCTCTT
GCAAAATCAAGATGCCTATCTCAAATCTGCTGGTGGTGTCAAATTGGATGAGCCTGCTATTGATTTAGCTGTTGCAGTGG
CGATTGCTTCGAGTTACAAGGACAAGCCAACCAATCCTCAGGAATGTTTTGTGGGAGAATTGGGTTTGACAGGAGAGATT
CGACGGGTCAATCGTATCGAACAACGTATCAATGAAGCGGCAAAACTTGGGTTTACAAAAATTTATGTACCCAAAAATTC
CTTGACAGGCATTAAACCACCTCAAGAAATTCAGGCGATAGGAGTGACGACTATCCAGGAAGTTTTGAAAATGGTCTTTG
CTTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-426)

AAA domain (AAA_25)

(64-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

97.792

99.78

0.976
  radA Streptococcus mitis NCTC 12261

97.572

99.78

0.974
  radA Streptococcus pneumoniae Rx1

97.572

99.78

0.974
  radA Streptococcus pneumoniae D39

97.572

99.78

0.974
  radA Streptococcus pneumoniae R6

97.572

99.78

0.974
  radA Streptococcus pneumoniae TIGR4

97.572

99.78

0.974
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

99.78

0.621

Multiple sequence alignment