Detailed information    

insolico Bioinformatically predicted

Overview


Name   recP/tkt   Type   Machinery gene
Locus tag   OKW88_RS03335 Genome accession   NZ_CP110105
Coordinates   712243..714246 (+) Length   667 a.a.
NCBI ID   WP_014476936.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 707243..719246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS03295 (OKW88_03285) pghL 707607..708365 (+) 759 WP_119899451.1 gamma-polyglutamate hydrolase PghL -
  OKW88_RS03300 (OKW88_03290) - 708392..708841 (-) 450 WP_003245454.1 YndM family protein -
  OKW88_RS03305 (OKW88_03295) fosM 709049..709483 (+) 435 WP_003231604.1 FosM family fosfomycin resistance protein -
  OKW88_RS03310 (OKW88_03300) - 709392..709734 (+) 343 Protein_661 hypothetical protein -
  OKW88_RS03315 (OKW88_03305) dinR/lexA 710021..710638 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  OKW88_RS03320 (OKW88_03310) yneA 710788..711105 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  OKW88_RS03325 (OKW88_03315) dinL 711124..711777 (+) 654 WP_015714011.1 recombinase family protein -
  OKW88_RS03330 (OKW88_03320) ynzC 711841..712074 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  OKW88_RS03335 (OKW88_03325) recP/tkt 712243..714246 (+) 2004 WP_014476936.1 transketolase Machinery gene
  OKW88_RS03340 (OKW88_03330) sirA 714399..714845 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  OKW88_RS03345 (OKW88_03335) yneF 714931..715149 (+) 219 WP_003221221.1 YneF family protein -
  OKW88_RS03350 (OKW88_03340) ynzD 715223..715396 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -
  OKW88_RS03355 (OKW88_03345) ccdA 715616..716323 (+) 708 WP_003231585.1 cytochrome c-type biogenesis protein CcdA -
  OKW88_RS03360 (OKW88_03350) yneI 716412..716774 (+) 363 WP_003245707.1 response regulator -
  OKW88_RS03365 (OKW88_03355) yneJ 716853..717344 (+) 492 WP_074794556.1 CcdC family protein -
  OKW88_RS03370 (OKW88_03360) yneK 717375..717803 (-) 429 WP_119899455.1 DynA interaction protein YneK -
  OKW88_RS03375 (OKW88_03365) cotM 718037..718429 (-) 393 WP_072174018.1 outer spore coat protein CotM -
  OKW88_RS03380 (OKW88_03370) sspP 718509..718655 (-) 147 WP_003221237.1 small acid-soluble spore protein P -
  OKW88_RS03385 (OKW88_03375) sspO 718687..718833 (-) 147 WP_003244839.1 acid-soluble spore protein SspO -

Sequence


Protein


Download         Length: 667 a.a.        Molecular weight: 72300.39 Da        Isoelectric Point: 4.7291

>NTDB_id=683036 OKW88_RS03335 WP_014476936.1 712243..714246(+) (recP/tkt) [Bacillus subtilis strain CF03]
MDTIEKKSVATIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNVSPANPGWFNRDRFVLSAGHGSALLYSMLHLSG
FDLSIEDLKGFRQWGSKTPGHPEFGHTAGVDATTGPLGQGIAMAVGMAIAERHLAETYNRDSFNVVDHYTYSICGDGDLM
EGISSEAASLAGHLQLGRLIVLYDSNDISLDGDLDRSFSENVKQRFEAMNWEVLYVEDGNNIEELTAAIEKARQNEKKPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGKEESKLTKEAYAWTYEEDFYVPSEVYEHFAAAVKESGEKKEQEWNAQFAKYKE
VYPELAEQLELAIKGELPKDWDQEVPVYEKGSSLASRASSGEVLNGLAKKIPFFVGGSADLAGSNKTTIKNAGDFTAVDY
SGKNFWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLAALMGLPVTYVFTHDSIAVGEDGPTHEPVEQLA
SLRAMPNLSLIRPADGNETAAAWKLAVQSTDHPTALVLTRQNLPTIDQTAEEALAGVEKGAYVVSKSKNETPDALLIASG
SEVGLAIEAQAELAKENIDVSVVSMPSMDRFEKQSDEYKNEVLPADVKKRLAIEMGSSFGWGKYTGLEGDVLGIDRFGAS
APGETIINEYGFSVPNVVNRVKALINK

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=683036 OKW88_RS03335 WP_014476936.1 712243..714246(+) (recP/tkt) [Bacillus subtilis strain CF03]
ATGGATACAATTGAAAAGAAATCAGTTGCTACCATTCGCACACTGTCAATAGACGCTATTGAAAAAGCAAATTCTGGTCA
CCCAGGGATGCCGATGGGAGCCGCTCCAATGGCATACACGCTGTGGACAAAATTTATGAACGTAAGTCCGGCAAACCCTG
GCTGGTTTAACCGTGACCGTTTTGTTTTATCTGCTGGACACGGGTCAGCACTATTATACAGCATGCTTCATTTAAGCGGG
TTTGATCTTAGTATTGAAGATCTTAAGGGATTCCGCCAGTGGGGCAGCAAAACACCAGGACATCCGGAATTCGGACATAC
TGCCGGTGTTGATGCTACAACAGGTCCGCTTGGCCAAGGAATTGCCATGGCAGTCGGTATGGCAATTGCTGAACGCCATT
TAGCGGAAACATACAACCGCGATTCATTTAACGTAGTCGATCATTATACATACAGTATTTGCGGTGATGGTGATTTAATG
GAAGGTATTTCTTCTGAAGCCGCTTCACTCGCAGGCCATCTTCAGCTTGGCCGTCTGATCGTACTATACGATTCTAATGA
CATCTCTCTTGATGGAGACCTCGACCGTTCATTCTCTGAAAACGTGAAACAGCGTTTTGAAGCAATGAATTGGGAAGTTC
TTTATGTTGAGGATGGAAACAATATTGAAGAATTAACAGCGGCTATCGAAAAAGCACGCCAAAATGAAAAGAAACCTACA
TTAATTGAAGTGAAAACTACAATCGGATTCGGTTCACCTAACCGTGCCGGTACATCCGGTGTTCACGGTGCGCCGCTTGG
TAAAGAGGAAAGCAAATTAACAAAAGAAGCTTACGCGTGGACATATGAAGAAGACTTCTACGTTCCGTCAGAAGTTTATG
AGCATTTCGCTGCAGCTGTTAAAGAATCAGGTGAGAAAAAAGAACAAGAATGGAATGCTCAATTCGCTAAATATAAAGAA
GTTTATCCTGAACTTGCTGAACAGCTTGAACTGGCAATCAAAGGAGAGCTTCCGAAGGACTGGGATCAAGAGGTTCCTGT
GTATGAAAAAGGAAGCAGCCTGGCATCCCGTGCATCTTCCGGTGAAGTTCTCAACGGACTTGCGAAAAAAATTCCTTTCT
TTGTCGGAGGTTCTGCTGACCTAGCGGGATCGAACAAAACGACTATTAAAAATGCCGGTGATTTTACAGCGGTTGATTAC
TCAGGCAAAAACTTCTGGTTTGGTGTACGTGAATTTGCGATGGGTGCAGCCTTAAACGGTATGGCGCTTCATGGCGGTCT
TCGTGTATTCGGCGGAACTTTCTTTGTCTTCTCTGATTACCTGCGTCCTGCGATTCGCCTTGCAGCGTTAATGGGCCTTC
CTGTGACATATGTCTTCACACATGACAGTATTGCGGTTGGTGAAGACGGTCCGACGCACGAGCCTGTTGAACAGCTTGCT
TCACTCCGTGCGATGCCTAACCTTTCTTTGATCCGTCCAGCAGACGGCAATGAGACAGCAGCAGCATGGAAGCTTGCAGT
GCAAAGCACTGATCACCCAACAGCGCTAGTGCTTACACGTCAAAACCTTCCTACCATCGATCAAACAGCTGAAGAAGCAT
TGGCAGGAGTAGAAAAAGGTGCATATGTCGTTTCTAAATCTAAAAACGAAACACCTGACGCTCTTCTCATTGCCTCCGGA
TCCGAGGTAGGTCTTGCAATTGAAGCGCAGGCTGAATTGGCAAAAGAAAATATCGATGTTTCTGTTGTCAGCATGCCTTC
AATGGACCGTTTTGAGAAACAATCTGATGAATACAAAAACGAAGTCCTTCCTGCAGATGTGAAAAAACGTCTTGCAATTG
AAATGGGCTCATCATTTGGATGGGGCAAATACACGGGGCTTGAAGGTGACGTTCTCGGCATAGACCGATTCGGTGCATCT
GCTCCTGGTGAAACCATCATTAACGAATACGGCTTCTCAGTTCCGAACGTAGTGAATCGAGTTAAGGCATTAATCAATAA
GTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.647

99.25

0.562