Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   OKW88_RS01820 Genome accession   NZ_CP110105
Coordinates   332985..334007 (+) Length   340 a.a.
NCBI ID   WP_131227384.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 327985..339007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS01785 (OKW88_01785) ylbE 328285..328524 (+) 240 WP_003232231.1 YlbE-like family protein -
  OKW88_RS01790 (OKW88_01790) ylbF 328640..329089 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  OKW88_RS01795 (OKW88_01795) ylbG 329144..329416 (+) 273 WP_015715839.1 YlbG family protein -
  OKW88_RS01800 (OKW88_01800) rsmD 329739..330293 (+) 555 WP_021479346.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OKW88_RS01805 (OKW88_01805) coaD 330298..330783 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  OKW88_RS01810 (OKW88_01810) spoVV 330794..332020 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  OKW88_RS01815 (OKW88_01815) ylbK 332201..332983 (+) 783 WP_003232221.1 patatin family protein -
  OKW88_RS01820 (OKW88_01820) sepM 332985..334007 (+) 1023 WP_131227384.1 protease DdcP Regulator
  OKW88_RS01825 (OKW88_01825) - 334198..334647 (-) 450 WP_128737830.1 hypothetical protein -
  OKW88_RS01830 (OKW88_01830) - 334720..335952 (-) 1233 WP_131227385.1 nucleotidyltransferase -
  OKW88_RS01835 (OKW88_01835) - 335949..336134 (-) 186 WP_131227386.1 hypothetical protein -
  OKW88_RS01840 (OKW88_01840) ylbN 336162..336680 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  OKW88_RS01845 (OKW88_01845) rpmF 336702..336881 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  OKW88_RS01850 (OKW88_01850) gerR 337027..337608 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  OKW88_RS01855 (OKW88_01855) ylbP 337665..338147 (-) 483 WP_014476736.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37564.15 Da        Isoelectric Point: 6.5347

>NTDB_id=683021 OKW88_RS01820 WP_131227384.1 332985..334007(+) (sepM) [Bacillus subtilis strain CF03]
MLRKKHFSWMLIILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=683021 OKW88_RS01820 WP_131227384.1 332985..334007(+) (sepM) [Bacillus subtilis strain CF03]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCATCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGATGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATCGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCTGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGTTAA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(60-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.429

100

0.406