Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   OKW88_RS01790 Genome accession   NZ_CP110105
Coordinates   328640..329089 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain CF03     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 323640..334089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS01750 (OKW88_01750) ctaE 323656..324279 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  OKW88_RS01755 (OKW88_01755) ctaF 324282..324614 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  OKW88_RS01760 (OKW88_01760) ctaG 324642..325535 (+) 894 WP_046664162.1 cytochrome c oxidase assembly factor CtaG -
  OKW88_RS01765 (OKW88_01765) ylbA 325567..325929 (-) 363 WP_003232238.1 YugN family protein -
  OKW88_RS01770 (OKW88_01770) ylbB 326069..326515 (+) 447 WP_003221362.1 CBS domain-containing protein -
  OKW88_RS01775 (OKW88_01775) ylbC 326599..327639 (+) 1041 WP_131227383.1 CAP domain-containing protein -
  OKW88_RS01780 (OKW88_01780) ylbD 327871..328269 (+) 399 WP_003232233.1 YlbD family protein -
  OKW88_RS01785 (OKW88_01785) ylbE 328285..328524 (+) 240 WP_003232231.1 YlbE-like family protein -
  OKW88_RS01790 (OKW88_01790) ylbF 328640..329089 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  OKW88_RS01795 (OKW88_01795) ylbG 329144..329416 (+) 273 WP_015715839.1 YlbG family protein -
  OKW88_RS01800 (OKW88_01800) rsmD 329739..330293 (+) 555 WP_021479346.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OKW88_RS01805 (OKW88_01805) coaD 330298..330783 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  OKW88_RS01810 (OKW88_01810) spoVV 330794..332020 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  OKW88_RS01815 (OKW88_01815) ylbK 332201..332983 (+) 783 WP_003232221.1 patatin family protein -
  OKW88_RS01820 (OKW88_01820) sepM 332985..334007 (+) 1023 WP_131227384.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=683020 OKW88_RS01790 WP_003221370.1 328640..329089(+) (ylbF) [Bacillus subtilis strain CF03]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=683020 OKW88_RS01790 WP_003221370.1 328640..329089(+) (ylbF) [Bacillus subtilis strain CF03]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCTATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1