Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPPMSS1_RS00290 | Genome accession | NZ_AP017633 |
| Coordinates | 65051..65626 (+) | Length | 191 a.a. |
| NCBI ID | WP_077232506.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PMSS1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 60051..70626
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPPMSS1_RS00265 (HPATCC43504_RS00265) | uvrD | 60742..62787 (+) | 2046 | WP_173668921.1 | DNA helicase UvrD | - |
| HPPMSS1_RS00270 (HPATCC43504_RS00270) | flgA | 62784..63440 (+) | 657 | WP_077232509.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPPMSS1_RS00275 (HPATCC43504_RS00275) | - | 63450..64013 (+) | 564 | WP_000780109.1 | UbiX family flavin prenyltransferase | - |
| HPPMSS1_RS00280 (HPATCC43504_RS00280) | coaD | 64013..64486 (+) | 474 | WP_077232508.1 | pantetheine-phosphate adenylyltransferase | - |
| HPPMSS1_RS00285 (HPATCC43504_RS00285) | tmk | 64488..65063 (+) | 576 | WP_077232507.1 | dTMP kinase | - |
| HPPMSS1_RS00290 (HPATCC43504_RS00290) | comFC | 65051..65626 (+) | 576 | WP_077232506.1 | ComF family protein | Machinery gene |
| HPPMSS1_RS00295 (HPATCC43504_RS00295) | - | 65659..67695 (+) | 2037 | WP_077232505.1 | N-6 DNA methylase | - |
| HPPMSS1_RS00300 (HPATCC43504_RS00300) | - | 67740..68315 (+) | 576 | Protein_58 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21308.83 Da Isoelectric Point: 8.6728
>NTDB_id=68286 HPPMSS1_RS00290 WP_077232506.1 65051..65626(+) (comFC) [Helicobacter pylori strain PMSS1]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=68286 HPPMSS1_RS00290 WP_077232506.1 65051..65626(+) (comFC) [Helicobacter pylori strain PMSS1]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAGAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCAGAGTTTGTGAAAATCCTGCAAGAACAGGGT
CTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCTTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCACACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAGAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCAGAGTTTGTGAAAATCCTGCAAGAACAGGGT
CTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCTTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCACACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
97.906 |
100 |
0.979 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.269 |
100 |
0.366 |