Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | HPATCC43504_RS07015 | Genome accession | NZ_AP017632 |
| Coordinates | 1467994..1468398 (-) | Length | 134 a.a. |
| NCBI ID | WP_108169257.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain ATCC 43504 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1462994..1473398
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPATCC43504_RS06990 (HPATCC43504_01401) | recJ | 1463539..1465089 (+) | 1551 | WP_108169252.1 | single-stranded-DNA-specific exonuclease RecJ | - |
| HPATCC43504_RS06995 (HPPMSS1_RS07315) | - | 1465242..1465969 (+) | 728 | Protein_1387 | RluA family pseudouridine synthase | - |
| HPATCC43504_RS07000 (HPATCC43504_01404) | - | 1466072..1466632 (-) | 561 | WP_108169254.1 | hypothetical protein | - |
| HPATCC43504_RS07005 (HPATCC43504_01405) | - | 1466616..1466954 (-) | 339 | WP_108169255.1 | hypothetical protein | - |
| HPATCC43504_RS07010 (HPATCC43504_01406) | - | 1467082..1467864 (-) | 783 | WP_108169256.1 | tetratricopeptide repeat protein | - |
| HPATCC43504_RS07015 (HPATCC43504_01408) | dprB | 1467994..1468398 (-) | 405 | WP_108169257.1 | Holliday junction resolvase RuvX | Machinery gene |
| HPATCC43504_RS07020 (HPATCC43504_01409) | dprA | 1468395..1469195 (-) | 801 | WP_108169258.1 | DNA-processing protein DprA | Machinery gene |
| HPATCC43504_RS07025 (HPATCC43504_01410) | minE | 1469207..1469440 (-) | 234 | WP_000051425.1 | cell division topological specificity factor MinE | - |
| HPATCC43504_RS07030 (HPATCC43504_01411) | minD | 1469437..1470243 (-) | 807 | WP_108169259.1 | septum site-determining protein MinD | - |
| HPATCC43504_RS07035 (HPATCC43504_01412) | ilvC | 1470267..1471259 (-) | 993 | WP_108169260.1 | ketol-acid reductoisomerase | - |
| HPATCC43504_RS07045 (HPATCC43504_01413) | - | 1471508..1472290 (+) | 783 | WP_108169261.1 | NAD+ synthase | - |
| HPATCC43504_RS07050 (HPATCC43504_01414) | - | 1472287..1473225 (+) | 939 | WP_108169262.1 | tetraacyldisaccharide 4'-kinase | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 15283.76 Da Isoelectric Point: 8.7247
>NTDB_id=68281 HPATCC43504_RS07015 WP_108169257.1 1467994..1468398(-) (dprB) [Helicobacter pylori strain ATCC 43504]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNKNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKNH
MILACDVGLKRIGIAVLLNGVILPLEAILRHNKNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKNH
Nucleotide
Download Length: 405 bp
>NTDB_id=68281 HPATCC43504_RS07015 WP_108169257.1 1467994..1468398(-) (dprB) [Helicobacter pylori strain ATCC 43504]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAATAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAATAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
95.522 |
100 |
0.955 |