Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHM48_RS06410 Genome accession   NZ_CP109942
Coordinates   1298328..1298924 (-) Length   198 a.a.
NCBI ID   WP_024399909.1    Uniprot ID   -
Organism   Streptococcus suis strain ID35541     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1293328..1303924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM48_RS06390 (OHM48_06390) - 1294453..1295151 (-) 699 WP_012775213.1 TIGR02206 family membrane protein -
  OHM48_RS06395 (OHM48_06395) murF 1295242..1296603 (-) 1362 WP_012775214.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  OHM48_RS06400 (OHM48_06400) - 1296732..1297112 (-) 381 WP_012775215.1 OsmC family protein -
  OHM48_RS06405 (OHM48_06405) - 1297200..1298246 (-) 1047 WP_264490786.1 D-alanine--D-alanine ligase -
  OHM48_RS06410 (OHM48_06410) recR 1298328..1298924 (-) 597 WP_024399909.1 recombination mediator RecR Machinery gene
  OHM48_RS06415 (OHM48_06415) pbp2b 1298933..1301002 (-) 2070 WP_014637681.1 penicillin-binding protein PBP2B -
  OHM48_RS06420 (OHM48_06420) - 1301094..1301828 (-) 735 WP_024399923.1 ATP-binding cassette domain-containing protein -
  OHM48_RS06425 (OHM48_06425) - 1301991..1302788 (-) 798 WP_264490787.1 ATP-binding cassette domain-containing protein -
  OHM48_RS06430 (OHM48_06430) vicX 1303044..1303847 (-) 804 WP_012027300.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21607.71 Da        Isoelectric Point: 4.5456

>NTDB_id=682670 OHM48_RS06410 WP_024399909.1 1298328..1298924(-) (recR) [Streptococcus suis strain ID35541]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLTYCSVCGNLTDQDPCGICQDSSRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDGINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=682670 OHM48_RS06410 WP_024399909.1 1298328..1298924(-) (recR) [Streptococcus suis strain ID35541]
ATGCTATATCCTACACCCATTGCCAAGTTGATTGACAGTTACTCCAAATTACCAGGAATCGGTATTAAGACAGCTACGCG
GCTGGCCTTCTATACCATTGGTATGGAAGATGATGTGGTCAATGAATTTGCAAAAAATCTCTTGGCTGCCAAGAGGGATT
TGACCTATTGTTCGGTTTGTGGCAATCTGACAGACCAGGACCCTTGCGGTATTTGTCAAGATAGCAGTCGTGACCAGTCG
ACTATTTTAATTGTAGAAGACAGTCGAGATGTGACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGGTATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATAAAAGTAACCCGACTAGCTCGTGGCTTAGCAGTCGGAAGTGACATTGAATACGCAGATGAAGTCAC
CCTCCTTCGTGCTATTGAGAACAGGACAGAATTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49