Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CPY96_RS12870 Genome accession   NZ_AP017630
Coordinates   2831401..2832786 (-) Length   461 a.a.
NCBI ID   WP_003464589.1    Uniprot ID   B1BV32
Organism   Clostridium perfringens strain CBA7123     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2826401..2837786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPY96_RS12850 ispD 2827773..2828450 (-) 678 WP_096517113.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CPY96_RS12855 - 2828464..2829570 (-) 1107 WP_096516926.1 PIN/TRAM domain-containing protein -
  CPY96_RS12860 - 2829882..2830283 (+) 402 WP_096516927.1 DUF1573 domain-containing protein -
  CPY96_RS12865 disA 2830317..2831381 (-) 1065 WP_003452233.1 DNA integrity scanning diadenylate cyclase DisA -
  CPY96_RS12870 radA 2831401..2832786 (-) 1386 WP_003464589.1 DNA repair protein RadA Machinery gene
  CPY96_RS12875 nagB 2833014..2833742 (-) 729 WP_096516928.1 glucosamine-6-phosphate deaminase -
  CPY96_RS12880 - 2833739..2834461 (-) 723 WP_096516929.1 GntR family transcriptional regulator -
  CPY96_RS14610 - 2834661..2834825 (+) 165 WP_164812340.1 hypothetical protein -
  CPY96_RS12885 - 2834919..2835146 (+) 228 WP_003452255.1 glutaredoxin family protein -
  CPY96_RS12890 - 2835268..2836716 (-) 1449 WP_096516930.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  CPY96_RS12895 - 2836733..2836966 (-) 234 WP_003452243.1 glutaredoxin family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50680.61 Da        Isoelectric Point: 7.9111

>NTDB_id=68260 CPY96_RS12870 WP_003464589.1 2831401..2832786(-) (radA) [Clostridium perfringens strain CBA7123]
MKKYGVGKVAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDTKSNQSSPKVERQIGELKKIKEIKSGEKERYDT
GIGELNRVLGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETN
LDVIEAYIDKLEPAFIIIDSIQTIYRETVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVD
TVLSFEGERTEEFRILRTMKNRFGTTAEIGVFEMRGEGLMQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLA
SETKAVMPRRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAASLEKLVVV
GEVGLTGEIRPISNCDRILNEAEKMGFLNAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=68260 CPY96_RS12870 WP_003464589.1 2831401..2832786(-) (radA) [Clostridium perfringens strain CBA7123]
ATGAAGAAATATGGAGTTGGTAAAGTGGCAAAGGTTAGAAGCATATATGTATGTCAAAATTGTGGATATGAAACACCTAA
GTGGATGGGTAAATGTCCAGAATGTAATAATTGGAATACTTTAGTTGAAGAGATTAGAGATACTAAGAGTAATCAATCTT
CTCCTAAGGTTGAAAGACAAATTGGTGAGCTTAAAAAGATAAAAGAAATTAAGTCAGGTGAAAAGGAAAGATATGATACT
GGAATTGGTGAATTAAATAGAGTATTAGGTGGAGGACTTGTTAAGGGGTCGCTTACACTTATATCTGGTGATCCTGGAAT
AGGTAAATCTACACTTCTTTTACAAACAGCCAATAATATTTCAAAAAAATATGGGAAAGTTTTATATGTTTCTGGGGAAG
AATCAGAAGAACAAATAAAAATAAGAGGAGACAGATTAAAAGTTGATGCAGAAGAACTTTATATAGTTTCCGAAACTAAT
CTTGATGTAATAGAAGCATATATAGATAAACTTGAACCAGCTTTCATAATAATAGATTCAATACAAACAATTTATAGAGA
AACAGTTTCTTCAGCACCAGGAAGTGTTTCACAGGTTAAGGAATGCTCAAATGCTGTAATGAGAATTGCTAAGGGAAAAA
ATATTCCTTTATTTATAGTTGCTCATGTTACTAAGCAAGGAGATTTAGCAGGACCAAGAGTATTAGAACACATGGTGGAT
ACTGTATTATCCTTTGAAGGGGAAAGAACTGAAGAATTTAGAATATTAAGAACCATGAAAAATAGATTTGGTACTACGGC
TGAAATAGGTGTTTTTGAAATGCGTGGAGAGGGATTAATGCAGGTTTATGATCCATCTAGCATGTTTTTAGAGGACACTA
GTTTTAATCAAGAAGGGTCAGTTGTAATTGGAGTTATGGAAGGAACTAGACCTATTCTTGTAGAAATACAATCATTAGCA
TCTGAAACAAAAGCAGTTATGCCTAGAAGAACTTCTGTGGGAGTAGAAAATTCAAGGTTAAGTTTAATATTAGCTGTATT
AGAAAAGAAATTAAGAGTTCCTTTTTATAATACTGATGTTTATGTAAATGTAGTAGGAGGACTTGAAATAGAAGGTACTA
CAGCAGATTTAGGAATTGCTATTTCACTTGTATCCTCTGTTAAAGGTAAGGCAGCTAGCTTAGAAAAATTAGTTGTTGTA
GGCGAGGTTGGGTTAACAGGTGAAATAAGACCAATATCAAATTGTGACAGAATATTAAATGAAGCAGAAAAAATGGGATT
TTTAAATGCAGTTGTTCCTTATAGAAGCTTAGAAAAATTAAAGGGAAGTAAATTAAACCTTATAGGAGTAAAAACTGTAA
GGGAAGCAATAGGAAAGATATTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-228)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(351-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1BV32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.89

98.265

0.49
  radA Streptococcus pneumoniae Rx1

47.357

98.482

0.466
  radA Streptococcus pneumoniae D39

47.357

98.482

0.466
  radA Streptococcus pneumoniae R6

47.357

98.482

0.466
  radA Streptococcus pneumoniae TIGR4

47.357

98.482

0.466
  radA Streptococcus mitis SK321

47.137

98.482

0.464
  radA Streptococcus mitis NCTC 12261

47.137

98.482

0.464

Multiple sequence alignment