Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   OHM51_RS08595 Genome accession   NZ_CP109941
Coordinates   1731391..1732431 (-) Length   346 a.a.
NCBI ID   WP_012027749.1    Uniprot ID   -
Organism   Streptococcus suis strain ID38828     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1726391..1737431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM51_RS08565 (OHM51_08565) - 1727047..1727355 (-) 309 WP_012027746.1 YlxQ-related RNA-binding protein -
  OHM51_RS08570 (OHM51_08570) rnpM 1727342..1727638 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  OHM51_RS08575 (OHM51_08575) nusA 1727655..1728797 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  OHM51_RS08580 (OHM51_08580) rimP 1728871..1729341 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  OHM51_RS08585 (OHM51_08585) trmB 1729912..1730550 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  OHM51_RS08590 (OHM51_08590) ccrZ 1730547..1731341 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  OHM51_RS08595 (OHM51_08595) pptB 1731391..1732431 (-) 1041 WP_012027749.1 ABC transporter permease Regulator
  OHM51_RS08600 (OHM51_08600) pptA 1732428..1733162 (-) 735 WP_012027751.1 ABC transporter ATP-binding protein Regulator
  OHM51_RS08605 (OHM51_08605) - 1733225..1733638 (+) 414 WP_012027752.1 HIT family protein -
  OHM51_RS08610 (OHM51_08610) - 1733640..1733942 (+) 303 WP_012027753.1 methyl-accepting chemotaxis protein -
  OHM51_RS08615 (OHM51_08615) - 1734051..1735244 (-) 1194 WP_012027754.1 LCP family protein -
  OHM51_RS08620 (OHM51_08620) - 1735241..1735768 (-) 528 WP_012027755.1 GNAT family N-acetyltransferase -
  OHM51_RS08625 (OHM51_08625) tsaE 1735761..1736201 (-) 441 WP_012775330.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 346 a.a.        Molecular weight: 40147.52 Da        Isoelectric Point: 10.1278

>NTDB_id=682591 OHM51_RS08595 WP_012027749.1 1731391..1732431(-) (pptB) [Streptococcus suis strain ID38828]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVLVVIAISLLVLLSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARRTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVSGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGIGTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYITQLYPLEKDSKKIGLQNLLRVILYSLLVVELGFALLFSKENA
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=682591 OHM51_RS08595 WP_012027749.1 1731391..1732431(-) (pptB) [Streptococcus suis strain ID38828]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATATCGTCAATTATTGTTGTCATTCCCTGAGAATC
CGTTGCCGATTGTTTTGGTGGTTATTGCAATCAGTCTACTGGTGCTATTGTCCGGAAGAATTGCGACTTATTTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAGGTTGCAGCCAGACGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TATCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACAACGGT
TAAAGGAATCGGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTCGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTCCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATATAACACAACTGTATCCTCTGGAGAAAGATTCCAAGAAAATTGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTAGTAGTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATGCG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

46.023

100

0.468

  pptB Streptococcus thermophilus LMD-9

45.455

100

0.462