Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   OHM49_RS08560 Genome accession   NZ_CP109940
Coordinates   1713553..1715337 (-) Length   594 a.a.
NCBI ID   WP_024394345.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34572     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1708553..1720337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM49_RS08545 (OHM49_08545) - 1711312..1711476 (-) 165 WP_024381780.1 hypothetical protein -
  OHM49_RS08550 (OHM49_08550) obgE 1711850..1713163 (-) 1314 WP_032513763.1 GTPase ObgE -
  OHM49_RS08555 (OHM49_08555) - 1713368..1713496 (-) 129 WP_002935474.1 DUF4044 domain-containing protein -
  OHM49_RS08560 (OHM49_08560) uvrC 1713553..1715337 (-) 1785 WP_024394345.1 excinuclease ABC subunit UvrC Machinery gene
  OHM49_RS08565 (OHM49_08565) - 1715578..1716321 (+) 744 WP_011922278.1 ABC transporter ATP-binding protein -
  OHM49_RS08570 (OHM49_08570) - 1716318..1717928 (+) 1611 WP_009909715.1 hypothetical protein -
  OHM49_RS08575 (OHM49_08575) - 1717951..1718394 (-) 444 WP_043032953.1 VOC family protein -
  OHM49_RS08580 (OHM49_08580) ldcB 1718483..1719238 (-) 756 WP_024394344.1 LD-carboxypeptidase LdcB/DacB -
  OHM49_RS08585 (OHM49_08585) - 1719600..1719851 (-) 252 WP_024394343.1 phage holin -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 68269.36 Da        Isoelectric Point: 8.6452

>NTDB_id=682487 OHM49_RS08560 WP_024394345.1 1713553..1715337(-) (uvrC) [Streptococcus suis strain ID34572]
MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDTKTEALVSEIADFEFIVTDSNIEALLLEIN
LIQENKPRYNIMLKDDKSYPFIKITKERHPRLMITRQIKKDGGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
YYHLGQCLAHGENLPSLSDYDKMAKEVAQFLTGHDDKIVKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAH
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEAL
VDTKVIKPQRGEKKQLINLATKNARVSLEQKFNLLEKNLEKTYGAVENIGQLLGIPTPVRIEAFDNSNIMGTSPVSAMVV
FENGVPNKKEYRKYKIKTVEGPDDYASMREVLQRRYSRVLRDDLTPPDLIIIDGGQGQVNVAKQVIEQELGMSIPIAGLQ
KNDKHQTHELLFGNPLEVVELPRNSQEFFLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSI
GNIQSASLQEIAEAGVPYKVAELVKENLSSKDEI

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=682487 OHM49_RS08560 WP_024394345.1 1713553..1715337(-) (uvrC) [Streptococcus suis strain ID34572]
ATGAACGATTTGATCAAGCATAAATTGGAGTTACTACCAGATAGCCCTGGCTGTTACCTCCATAAAAACAAGTACGGTAA
GATTATCTATGTGGGCAAGGCCAAAAACCTGCGTAATCGAGTGCGGTCTTATTTTCGTGGTGCCCATGATACCAAGACAG
AGGCCTTGGTGTCAGAGATTGCCGACTTTGAATTCATCGTAACGGATTCTAATATCGAGGCGCTCTTGTTGGAAATCAAT
CTGATTCAGGAAAACAAGCCTCGCTATAACATCATGCTCAAGGATGACAAGTCTTATCCCTTTATTAAGATTACCAAGGA
ACGTCATCCACGGCTGATGATTACACGGCAGATTAAGAAGGACGGTGGTCAGTATTTTGGTCCCTATCCAGATGTGGGTG
CGGCCAACCAGACCCTCAAACTATTGGAGCGCCTCTATCCTTTCCGCAAGTGTAAATTACCTGAGAACAAGTATTGTCTT
TATTATCATTTGGGGCAATGTTTGGCTCACGGGGAAAACCTGCCCAGCCTGTCTGACTATGATAAGATGGCCAAGGAAGT
GGCCCAGTTCTTGACGGGTCATGATGATAAGATTGTCAAGGAAGTGCAGGACAAGATGAAGGCGGCTGCTGGCAATTTGG
AATTTGAAAAGGCTGCGGAATATCGTGATGTCCTTCAATCCATTTCAACCCTACGGACCAAGCAACGAGTGATGGCTCAT
GACTTGCAAAACCGCGATGTCTTTGGTTATTATGTAGACAAGGGCTGGATGTGTGTGCAGGTTTTCTTTGTTCGGCAGGG
GAAACTGATTGAGCGGAATGTCAATCTTTTTCCATATTATAATGATGCGGACGAAGACTTTTTGACCTACATCGGTCAGT
TTTACAGGGACCAGCAACATTTGATTCCCTCTGAGGTCTTGATACCGCAGGATATTGACCAAGAAGCCGTAGAAGCTCTG
GTAGATACCAAGGTCATCAAGCCTCAGCGTGGCGAGAAGAAGCAACTCATCAATCTGGCAACCAAGAATGCGCGTGTTAG
TCTGGAGCAGAAGTTTAATCTCCTGGAGAAAAATCTGGAGAAGACTTACGGTGCAGTGGAGAATATCGGTCAGTTGCTGG
GGATTCCGACGCCTGTGCGGATTGAGGCCTTTGACAACTCCAACATCATGGGCACCAGCCCTGTGTCGGCTATGGTGGTC
TTTGAAAATGGGGTGCCTAATAAAAAAGAATACCGCAAGTACAAGATTAAGACGGTTGAGGGGCCAGATGATTATGCCTC
TATGCGTGAAGTGCTGCAACGCCGTTATAGTCGGGTCTTGAGGGACGATTTGACACCGCCTGATTTGATTATCATTGACG
GAGGTCAGGGGCAGGTCAATGTCGCCAAGCAGGTCATCGAGCAGGAGTTGGGTATGTCCATTCCCATTGCAGGTTTGCAG
AAGAATGACAAGCACCAGACCCACGAATTGCTCTTTGGCAATCCGCTGGAAGTGGTGGAGTTGCCACGTAATTCTCAGGA
ATTTTTCCTCCTGCATCGGATTCAAGATGAGGTTCACCGCTTTGCTATTGAATTTCATCGTCAGGTTCGGTCAAAAAATT
CCTTCTCATCTAAATTGGACGGCATAGAAGGTTTGGGACCAAAACGCAAACAGGCTTTGATGAAGCATTTCAAGTCTATT
GGCAATATCCAGTCGGCCAGTCTACAAGAAATCGCAGAAGCAGGTGTGCCGTATAAGGTGGCGGAGTTGGTCAAGGAAAA
CCTTTCTTCAAAGGATGAGATTTGA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrB/uvrC motif (UVR)

(196-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

77.066

99.832

0.769
  uvrC Streptococcus pneumoniae R6

76.728

99.832

0.766
  uvrC Streptococcus pneumoniae D39

76.728

99.832

0.766