Detailed information NTG0068240

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JLH08_RS03980
• Genome accession: NZ_AP022540
• Coordinates: 845017..845826 (+)
• Length: 269 a.a.
• NCBI ID: WP_000895883.1
• Uniprot ID: -
• Organism: Escherichia coli strain THO-010
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 840017..850826

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JLH08_RS03980 (THOESC010_07850)	pilD	845017..845826 (+)	810	WP_000895883.1	prepilin peptidase PppA	Machinery gene
JLH08_RS03985 (THOESC010_07860)	gspS2	845892..846302 (+)	411	WP_021557202.1	type II secretion system pilot lipoprotein GspS-beta	-
JLH08_RS03990 (THOESC010_07870)	gspC	846320..847279 (+)	960	WP_024227187.1	type II secretion system protein GspC	-
JLH08_RS03995 (THOESC010_07880)	gspD	847309..849369 (+)	2061	WP_000498829.1	type II secretion system secretin GspD	-

Sequence

Protein

• Length: 269 a.a.
• Molecular weight: 29538.25 Da
• Isoelectric Point: 8.3829

>NTDB_id=68240 JLH08_RS03980 WP_000895883.1 845017..845826(+) (pilD) [Escherichia coli strain THO-010]
MLFDVFQQYPVAMPILATVGGLIIGSFLNVVIWRYPIMLRQQMAEFHGEMPSAQSKISLALPRSHCPHCQQTIRIRDNIP
LLSWLMLKGRCRDCQAKISKRYPLVELLTALAFLLASLVWPESGWALAVMILSAWLIAASIIDLDHQWLPDVFTQGVLWT
GLIAAWAQQSPLTLQDAVTGVLVGFITFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGPLSLPNVALIASCCGLIYAV
ITKRGSTTLPFGPCLSLGGIATLYLQALF

Nucleotide

• Length: 810 bp

>NTDB_id=68240 JLH08_RS03980 WP_000895883.1 845017..845826(+) (pilD) [Escherichia coli strain THO-010]
ATGCTTTTTGATGTTTTTCAGCAATACCCCGTGGCGATGCCCATACTGGCTACCGTCGGAGGATTGATCATCGGCAGTTT
TTTGAATGTGGTGATTTGGCGTTACCCCATCATGCTGCGCCAACAAATGGCGGAGTTTCATGGTGAAATGCCGAGTGCGC
AGTCAAAAATAAGCCTTGCGCTACCGCGTTCGCACTGCCCACATTGTCAGCAGACCATCCGGATACGTGACAATATTCCG
CTGCTCTCCTGGCTGATGCTCAAAGGGCGCTGCCGTGATTGTCAGGCGAAAATCAGCAAGCGTTATCCGCTGGTGGAGTT
ATTGACGGCACTCGCTTTTTTGCTGGCGAGCCTGGTGTGGCCGGAAAGTGGATGGGCGCTGGCGGTGATGATATTATCCG
CCTGGCTGATTGCCGCGAGCATCATCGACCTCGATCACCAATGGCTGCCCGATGTTTTTACTCAGGGCGTATTGTGGACG
GGACTAATTGCGGCATGGGCGCAGCAGAGCCCGCTCACGCTACAAGATGCAGTCACCGGCGTCCTGGTGGGGTTTATCAC
TTTTTACTCTCTGCGCTGGATAGCCGGAATAGTTCTGCGTAAAGAAGCATTAGGCATGGGCGATGTATTATTGTTCGCCG
CTTTAGGTAGTTGGGTGGGACCGTTATCACTGCCCAATGTTGCTTTAATCGCCTCATGCTGCGGCCTGATATATGCCGTT
ATTACAAAAAGAGGATCAACCACACTGCCTTTTGGACCGTGTTTAAGTCTGGGCGGTATAGCAACACTTTATCTACAGGC
ATTGTTTTAA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-118)

• Type IV leader peptidase family (Peptidase_A24) (130-239)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	45.693	99.257	0.454
pilD	Vibrio campbellii strain DS40M4	42.066	100	0.424
pilD	Acinetobacter nosocomialis M2	38.491	98.513	0.379
pilD	Neisseria gonorrhoeae MS11	39.3	95.539	0.375
pilD	Acinetobacter baumannii D1279779	38.113	98.513	0.375