Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   OHM52_RS04830 Genome accession   NZ_CP109937
Coordinates   962730..963395 (-) Length   221 a.a.
NCBI ID   WP_009909826.1    Uniprot ID   -
Organism   Streptococcus suis strain TRG6     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 957730..968395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM52_RS04810 (OHM52_04810) - 958380..958901 (+) 522 WP_002935005.1 AAA family ATPase -
  OHM52_RS04815 (OHM52_04815) xerS 959068..960138 (+) 1071 WP_002935006.1 tyrosine recombinase XerS Machinery gene
  OHM52_RS04820 (OHM52_04820) - 960208..961716 (-) 1509 WP_013730362.1 phosphoglucomutase -
  OHM52_RS04825 (OHM52_04825) - 961792..962733 (-) 942 WP_002935009.1 sensor histidine kinase -
  OHM52_RS04830 (OHM52_04830) braR 962730..963395 (-) 666 WP_009909826.1 response regulator transcription factor Regulator
  OHM52_RS04835 (OHM52_04835) - 963434..963640 (-) 207 WP_370287028.1 type II toxin-antitoxin system RelE/ParE family toxin -
  OHM52_RS04840 (OHM52_04840) relB 963681..963920 (-) 240 WP_002935014.1 type II toxin-antitoxin system RelB family antitoxin -
  OHM52_RS04845 (OHM52_04845) - 964012..965983 (-) 1972 Protein_923 FtsX-like permease family protein -
  OHM52_RS04850 (OHM52_04850) - 965984..966736 (-) 753 WP_011922409.1 ABC transporter ATP-binding protein -
  OHM52_RS04855 (OHM52_04855) - 966872..967606 (-) 735 WP_011922410.1 ABC transporter permease -
  OHM52_RS04860 (OHM52_04860) - 967608..968354 (-) 747 WP_011922411.1 ABC transporter permease -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25459.28 Da        Isoelectric Point: 4.7792

>NTDB_id=682263 OHM52_RS04830 WP_009909826.1 962730..963395(-) (braR) [Streptococcus suis strain TRG6]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSNELEQVQLSPTETKILS
ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=682263 OHM52_RS04830 WP_009909826.1 962730..963395(-) (braR) [Streptococcus suis strain TRG6]
ATGAAAAAAGAGAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAGCTCTTGAAGCAGCATTTGGGAAAATCGTA
TCAGGTGGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTCGCTGAAATCAAACCAGACTTGGTGCTGATGGACA
TTAGCCTGCCTTATTACAACGGTTTTTACTGGACGACAGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATCTCC
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTGTCTAAGCCGTTTTCTCTGGG
GATTTTGGATGCCAAAATCGGCGCCTTCTTGCGTCGGGTTAATCAATTCAGCAAATCAACTGATTTGTCAATTGACCAGT
TCCAACTTAGTTTAGACGGGCGATTTTCAAACGAATTGGAACAGGTTCAATTGTCTCCTACGGAAACCAAGATTTTGTCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGAAGAACTCCTGGAAAAACTCTGGGAAAATGAAGAATTTATTGA
CCAGAACACGCTCAATGTCAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACGGTTC
GTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.273

99.548

0.471