Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   M0696_RS12020 Genome accession   NZ_CP096590
Coordinates   2404107..2405837 (-) Length   576 a.a.
NCBI ID   WP_222143135.1    Uniprot ID   -
Organism   Bacillus rugosus strain A78.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2399107..2410837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS21070 - 2399699..2399782 (+) 84 Protein_2319 hypothetical protein -
  M0696_RS12005 (M0696_12005) - 2399918..2401036 (+) 1119 WP_248601994.1 NADH-dependent flavin oxidoreductase -
  M0696_RS12010 (M0696_12010) spo0A 2401572..2402375 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  M0696_RS12015 (M0696_12015) spoIVB 2402652..2403932 (-) 1281 WP_166850987.1 SpoIVB peptidase -
  M0696_RS12020 (M0696_12020) recN 2404107..2405837 (-) 1731 WP_222143135.1 DNA repair protein RecN Machinery gene
  M0696_RS12025 (M0696_12025) argR 2405873..2406322 (-) 450 WP_124072962.1 arginine repressor ArgR -
  M0696_RS12030 (M0696_12030) - 2406419..2407264 (-) 846 WP_248601995.1 TlyA family RNA methyltransferase -
  M0696_RS12035 (M0696_12035) dxs 2407261..2409162 (-) 1902 WP_248601996.1 1-deoxy-D-xylulose-5-phosphate synthase -
  M0696_RS12040 (M0696_12040) - 2409342..2410232 (-) 891 WP_222143137.1 polyprenyl synthetase family protein -
  M0696_RS12045 (M0696_12045) - 2410222..2410476 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64530.19 Da        Isoelectric Point: 4.7096

>NTDB_id=681956 M0696_RS12020 WP_222143135.1 2404107..2405837(-) (recN) [Bacillus rugosus strain A78.1]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFDVC
TEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYHRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLDDVSDINESLKKLSEGVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSVKKELDSVGKDVAVEAANVSQIRKAWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRDEEAPIVNGQPVQLSEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=681956 M0696_RS12020 WP_222143135.1 2404107..2405837(-) (recN) [Bacillus rugosus strain A78.1]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTCACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATTGACGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTCAGATATGGAGAGACAAAAGCCGAGCTTGAAGGGCTGTTTCTGCTGGACAGCGGCCATCCCGTTTTTGACGTATGC
ACTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTTATGAGAAGGGATATCAGCACGAGCGGAAAAAGCGTTTGCCG
TGTTAATGGAAAGCTTGTCACGATTGCTTCACTAAGAGAGATCGGCAGACTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAATCATCTCCAGCTTTTGGACAAGTTCGCCGGAGCCGAAGTAGAAAGCGCACTTCAA
GCGTATCAGGAAGGGTATCATCGGTATATGAAGCTGCTTAAAAAGCTAAAGCAGCTTTCTGAAAGTGAACAGGAAATGGC
CCACCGCCTTGACCTCATTCAATTTCAGCTCGAAGAAATAGAATCGGCAAAGCTCGAGCTTAATGAAGATGAACAGCTTC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAAAAGATATATGAATCGCTACAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGACTGGACTGGGTCGGAATGGCATCAGCGCAGCTTGACGATGTATCTGATATTAACGAATCGCTGAAAAAACT
GTCTGAAGGTGTATCGAACTCCTACTATCTTCTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGATCCGGAACGCCTGAACTATATTGAGACGCGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCAACTGTT
GAGGATATTTTGGAATACGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCATCTTCAAAGCGT
GAAAAAGGAGCTTGACTCAGTCGGCAAAGATGTCGCAGTAGAAGCGGCAAATGTTTCGCAAATCCGGAAAGCATGGGCGA
AAAAGCTGGCCGATGAGATTCATCGCGAATTAAAAAGCTTGTATATGGAAAAATCAACTTTTGATACAGAATTTAAGGTT
AGAACAGCGTCCCGCGATGAGGAGGCGCCGATTGTAAATGGCCAGCCTGTTCAGTTGTCTGAACAAGGGATTGATCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAACCGCTGAAATCCCTTTCGAAAGTCGCTTCCGGGGGAGAGCTGTCACGGG
TGATGCTTGCCTTAAAAAGCATTTTTTCTTCACAACAGGATGTAACGTCCATTATTTTCGATGAGGTCGATACCGGTGTA
AGCGGCAGAGTCGCACAGGCAATCGCTGAAAAGATCCATAAAGTGTCGATAGGATCACAAGTGCTATGTATTACACACTT
GCCTCAGGTGGCTGCCATGGCAGATACGCATCTTTATATTGCGAAGGAATTAAAAGACGGCAGAACGACCACTCGTGTCA
AGCCGCTGTCTAAGCAGGAAAAGGTGGCGGAAATCGGGCGCATGATTGCCGGAGTCGAAGTAACAGACTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

96.354

100

0.964