Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M0696_RS08735 Genome accession   NZ_CP096590
Coordinates   1705555..1706448 (+) Length   297 a.a.
NCBI ID   WP_222142822.1    Uniprot ID   -
Organism   Bacillus rugosus strain A78.1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1700555..1711448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS08715 (M0696_08715) - 1701224..1702954 (+) 1731 WP_248602688.1 hypothetical protein -
  M0696_RS08720 (M0696_08720) - 1702951..1703232 (+) 282 WP_222142821.1 FlhB-like flagellar biosynthesis protein -
  M0696_RS08725 (M0696_08725) sucC 1703406..1704563 (+) 1158 WP_166852996.1 ADP-forming succinate--CoA ligase subunit beta -
  M0696_RS08730 (M0696_08730) sucD 1704592..1705494 (+) 903 WP_024572248.1 succinate--CoA ligase subunit alpha -
  M0696_RS08735 (M0696_08735) dprA 1705555..1706448 (+) 894 WP_222142822.1 DNA-processing protein DprA Machinery gene
  M0696_RS08740 (M0696_08740) topA 1706633..1708708 (+) 2076 WP_248602689.1 type I DNA topoisomerase -
  M0696_RS08745 (M0696_08745) trmFO 1708784..1710091 (+) 1308 WP_166852985.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M0696_RS08750 (M0696_08750) xerC 1710158..1711072 (+) 915 WP_166852982.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32847.21 Da        Isoelectric Point: 9.7692

>NTDB_id=681950 M0696_RS08735 WP_222142822.1 1705555..1706448(+) (dprA) [Bacillus rugosus strain A78.1]
MDQAAACLMICRINQLLSPSLLLKWWKADPSMSLTSPVLETVTQGKIKAAALKNKIEEHYPKLQPVLAAYHEQGINTIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGIQVVNHLTKELCRKNWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADYMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIRSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=681950 M0696_RS08735 WP_222142822.1 1705555..1706448(+) (dprA) [Bacillus rugosus strain A78.1]
TTGGATCAGGCCGCTGCCTGTTTAATGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGACCCGTCTATGTCGCTGACGTCACCAGTGTTAGAAACTGTTACTCAAGGTAAAATAAAGGCAGCTGCATTAAAAA
ACAAAATAGAAGAACATTATCCAAAACTTCAGCCTGTACTTGCTGCTTACCATGAGCAAGGCATTAACACCATCCCGATT
TCTTCAAAGCAATATCCTTTCTGGCTGAAAACCATTTATGATCCCCCCGCCGTCCTGTTTGCAAAGGGTGATATGACCCT
TCTTTCTAAAGGGAGGAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGATACAAGTTGTCAATCATCTTA
CAAAAGAGCTTTGCCGTAAAAATTGGGTGATTGTCAGCGGACTGGCGTCTGGAATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGACGGACAATCGGCGTCATTGCAGGTGGATTTCAACACATTTATCCCCGGGAAAACCTTCAGTTAGC
TGATTACATGGCTAAACACCATATCCTTCTGTCAGAGCACCCACCTGAAACCAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATCATCAGCGGACTAAGTGAAGGAGTTATTGTCGTGCAGGGCAAAGAAAAAAGCGGTTCGTTGATTACTGCA
TATCAAGCACTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCAATAAGGTCAGCAGAGGATATTTTCGAGGAGCTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

93.939

100

0.939
  dprA Lactococcus lactis subsp. cremoris KW2

43.019

89.226

0.384
  dprA Streptococcus mutans UA159

46.725

77.104

0.36