Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   M0696_RS06230 Genome accession   NZ_CP096590
Coordinates   1234405..1235358 (+) Length   317 a.a.
NCBI ID   WP_222142591.1    Uniprot ID   -
Organism   Bacillus rugosus strain A78.1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1229405..1240358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS06205 (M0696_06205) argF 1231236..1232180 (+) 945 WP_166853643.1 ornithine carbamoyltransferase -
  M0696_RS06210 (M0696_06210) - 1232281..1232460 (+) 180 WP_003224549.1 YjzC family protein -
  M0696_RS06215 (M0696_06215) - 1232505..1232690 (-) 186 WP_003224551.1 YjzD family protein -
  M0696_RS06220 (M0696_06220) - 1232941..1233675 (+) 735 WP_248602604.1 hypothetical protein -
  M0696_RS06225 (M0696_06225) - 1233757..1234314 (+) 558 WP_166853641.1 hypothetical protein -
  M0696_RS06230 (M0696_06230) med 1234405..1235358 (+) 954 WP_222142591.1 transcriptional regulator Med Regulator
  M0696_RS06235 (M0696_06235) comZ 1235373..1235564 (+) 192 WP_222142592.1 ComZ family protein Regulator
  M0696_RS06240 (M0696_06240) - 1235594..1235821 (-) 228 WP_222142933.1 hypothetical protein -
  M0696_RS06245 (M0696_06245) fabH 1235987..1236925 (+) 939 WP_222142593.1 beta-ketoacyl-ACP synthase III -
  M0696_RS06250 (M0696_06250) fabF 1236950..1238191 (+) 1242 WP_222142594.1 beta-ketoacyl-ACP synthase II -
  M0696_RS06255 (M0696_06255) - 1238267..1239052 (+) 786 WP_166853637.1 DUF2268 domain-containing protein -
  M0696_RS06260 (M0696_06260) appD 1239242..1240228 (+) 987 WP_248602605.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35326.88 Da        Isoelectric Point: 4.6563

>NTDB_id=681938 M0696_RS06230 WP_222142591.1 1234405..1235358(+) (med) [Bacillus rugosus strain A78.1]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTDEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVSEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLKTGVVDMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=681938 M0696_RS06230 WP_222142591.1 1234405..1235358(+) (med) [Bacillus rugosus strain A78.1]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTAAGCGGTTGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCAAAATACAATGTGGACGTTTACTATAAAGAAGGCGTTAAAACAGATGAAGATATTATAAATGCGATTGAAGAT
TTTCATAAGCGGGGCGTTAATCTTCTCTATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCTAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTCAGCGGCGAAGCAA
TGGGCTTTTTTGGGGGAATGACAGCTGCCCATATGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAG
CCGGAGGTTGACGGTTTTATCAAAGGAGCCAAATATGAAAATCCGGATATAGAAGTAAACACAAAATATACGGATCATTG
GGATGATGATACGACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGGGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGATGGCCTTTATGCCATCGGCTATGTCACAGATCAGTCGGATCTG
GGCGAAAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAGCAATTCAACAAAGG
CACCCTTGAAGGCGGCGATCATTACTACGATCTGAAAACGGGGGTTGTTGACATGGGAACATTCAGCCCGCTTGTCGATA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACGTACAACAAAACAGGCGAACTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

98.423

100

0.984