Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   M1F46_RS04780 Genome accession   NZ_CP096539
Coordinates   997351..998337 (+) Length   328 a.a.
NCBI ID   WP_031912699.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RIVM_M047065     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 992351..1003337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F46_RS04760 (M1F46_04755) - 992720..994341 (+) 1622 Protein_928 peptide ABC transporter substrate-binding protein -
  M1F46_RS04765 (M1F46_04760) trpS 994461..995450 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  M1F46_RS04770 (M1F46_04765) spxA 995745..996140 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  M1F46_RS04775 (M1F46_04770) mecA 996511..997230 (+) 720 WP_001217731.1 adaptor protein MecA -
  M1F46_RS04780 (M1F46_04775) coiA 997351..998337 (+) 987 WP_031912699.1 competence protein CoiA family protein Machinery gene
  M1F46_RS04785 (M1F46_04780) pepF 998385..1000193 (+) 1809 WP_000082727.1 oligoendopeptidase F -
  M1F46_RS04790 (M1F46_04785) yjbH 1000653..1001459 (-) 807 WP_000896695.1 protease adaptor protein YjbH -
  M1F46_RS04795 (M1F46_04790) - 1001482..1001847 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  M1F46_RS04800 (M1F46_04795) - 1001951..1002544 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  M1F46_RS04805 (M1F46_04800) - 1002730..1003077 (+) 348 WP_001242104.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38830.40 Da        Isoelectric Point: 9.4277

>NTDB_id=681684 M1F46_RS04780 WP_031912699.1 997351..998337(+) (coiA) [Staphylococcus aureus strain RIVM_M047065]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPISYKQILQRMEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNVKMSELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGESILVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=681684 M1F46_RS04780 WP_031912699.1 997351..998337(+) (coiA) [Staphylococcus aureus strain RIVM_M047065]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTTCTTATAAACAGATTCTTCAACGAATGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGTCAAAATGAGTGAGTTGTTTAATGAGGCACCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAGAAAGCATATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCGATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

95.732

100

0.957
  coiA Staphylococcus aureus MW2

95.732

100

0.957