Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M1F47_RS06055 Genome accession   NZ_CP096535
Coordinates   1254854..1255726 (+) Length   290 a.a.
NCBI ID   WP_000620182.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RIVM_M047916     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1249854..1260726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F47_RS06025 (M1F47_06020) - 1250001..1250768 (+) 768 WP_000176395.1 ribonuclease HII -
  M1F47_RS06030 (M1F47_06025) sucC 1250877..1252043 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  M1F47_RS06035 (M1F47_06030) sucD 1252065..1252973 (+) 909 WP_000110258.1 succinate--CoA ligase subunit alpha -
  M1F47_RS06040 - 1253200..1253255 (+) 56 Protein_1181 YSIRK-type signal peptide-containing protein -
  M1F47_RS06045 (M1F47_06040) - 1253260..1253412 (+) 153 Protein_1182 cell wall hydrolase -
  M1F47_RS06050 (M1F47_06045) fmhC 1253440..1254683 (+) 1244 Protein_1183 FemA/FemB family glycyltransferase FmhC -
  M1F47_RS06055 (M1F47_06050) dprA 1254854..1255726 (+) 873 WP_000620182.1 DNA-processing protein DprA Machinery gene
  M1F47_RS06060 (M1F47_06055) topA 1255900..1257975 (+) 2076 WP_001807811.1 type I DNA topoisomerase -
  M1F47_RS06065 (M1F47_06060) trmFO 1258131..1259438 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33534.97 Da        Isoelectric Point: 9.6076

>NTDB_id=681643 M1F47_RS06055 WP_000620182.1 1254854..1255726(+) (dprA) [Staphylococcus aureus strain RIVM_M047916]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=681643 M1F47_RS06055 WP_000620182.1 1254854..1255726(+) (dprA) [Staphylococcus aureus strain RIVM_M047916]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCTGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986