Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   M1F47_RS04910 Genome accession   NZ_CP096535
Coordinates   1025585..1026154 (-) Length   189 a.a.
NCBI ID   WP_000287260.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RIVM_M047916     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1020585..1031154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F47_RS04890 (M1F47_04885) - 1022088..1023446 (+) 1359 WP_000021872.1 TrkH family potassium uptake protein -
  M1F47_RS04895 (M1F47_04890) - 1023585..1025096 (+) 1512 WP_000414168.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  M1F47_RS04910 (M1F47_04905) comK/comK1 1025585..1026154 (-) 570 WP_000287260.1 competence protein ComK Regulator
  M1F47_RS04915 (M1F47_04910) - 1026364..1026582 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  M1F47_RS04920 (M1F47_04915) - 1026663..1027649 (-) 987 WP_000668814.1 lipoate--protein ligase -
  M1F47_RS04925 (M1F47_04920) - 1027848..1028024 (+) 177 WP_000214898.1 YkvS family protein -
  M1F47_RS04930 (M1F47_04925) - 1028039..1028641 (+) 603 WP_001033867.1 CPBP family glutamic-type intramembrane protease -
  M1F47_RS04935 (M1F47_04930) - 1029653..1029937 (+) 285 WP_000790905.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22624.86 Da        Isoelectric Point: 9.6092

>NTDB_id=681642 M1F47_RS04910 WP_000287260.1 1025585..1026154(-) (comK/comK1) [Staphylococcus aureus strain RIVM_M047916]
MYSQNIYVIRKGDMVIRPAFDDDDQRHGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=681642 M1F47_RS04910 WP_000287260.1 1025585..1026154(-) (comK/comK1) [Staphylococcus aureus strain RIVM_M047916]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGACA
TGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATCAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995