Detailed information    

insolico Bioinformatically predicted

Overview


Name   sigH   Type   Regulator
Locus tag   M1F47_RS02760 Genome accession   NZ_CP096535
Coordinates   582834..583403 (+) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RIVM_M047916     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 577834..588403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F47_RS02735 (M1F47_02730) cysE 579046..579693 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  M1F47_RS02740 (M1F47_02735) cysS 579677..581077 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  M1F47_RS02745 (M1F47_02740) - 581070..581474 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  M1F47_RS02750 (M1F47_02745) rlmB 581482..582228 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M1F47_RS02755 (M1F47_02750) - 582228..582752 (+) 525 WP_000664738.1 NYN domain-containing protein -
  M1F47_RS02760 (M1F47_02755) sigH 582834..583403 (+) 570 WP_000872866.1 RNA polymerase sigma factor Regulator
  M1F47_RS02765 (M1F47_02760) rpmG 583518..583661 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  M1F47_RS02770 (M1F47_02765) secE 583717..583899 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  M1F47_RS02775 (M1F47_02770) nusG 583912..584460 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  M1F47_RS02780 (M1F47_02775) rplK 584641..585063 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  M1F47_RS02785 (M1F47_02780) rplA 585271..585963 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  M1F47_RS02790 (M1F47_02785) rplJ 586235..586735 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  M1F47_RS02795 (M1F47_02790) rplL 586778..587146 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  M1F47_RS02800 (M1F47_02795) - 587321..587929 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence


Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=681634 M1F47_RS02760 WP_000872866.1 582834..583403(+) (sigH) [Staphylococcus aureus strain RIVM_M047916]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=681634 M1F47_RS02760 WP_000872866.1 582834..583403(+) (sigH) [Staphylococcus aureus strain RIVM_M047916]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains


Predicted by InterproScan.

(26-92)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984

  sigH Staphylococcus aureus N315

97.354

100

0.974