Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   M1F51_RS05350 Genome accession   NZ_CP096526
Coordinates   1068609..1069295 (+) Length   228 a.a.
NCBI ID   WP_267359541.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RIVM_M087195     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1063609..1074295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F51_RS05315 (M1F51_05295) yqeH 1064136..1065236 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  M1F51_RS05320 (M1F51_05300) aroE 1065250..1066056 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  M1F51_RS05325 (M1F51_05305) yhbY 1066060..1066350 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  M1F51_RS05330 (M1F51_05310) nadD 1066353..1066922 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  M1F51_RS05335 (M1F51_05315) yqeK 1066912..1067496 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  M1F51_RS05340 (M1F51_05320) rsfS 1067497..1067850 (+) 354 WP_001088020.1 ribosome silencing factor -
  M1F51_RS05345 (M1F51_05325) - 1067853..1068569 (+) 717 WP_000084838.1 class I SAM-dependent methyltransferase -
  M1F51_RS05350 (M1F51_05330) comEA 1068609..1069295 (+) 687 WP_267359541.1 ComEA family DNA-binding protein Machinery gene
  M1F51_RS05355 (M1F51_05335) - 1069387..1069848 (+) 462 WP_000439690.1 ComE operon protein 2 -
  M1F51_RS05360 (M1F51_05340) comEC 1069853..1072054 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M1F51_RS05365 (M1F51_05345) holA 1072111..1073085 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  M1F51_RS05370 (M1F51_05350) rpsT 1073130..1073381 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25751.35 Da        Isoelectric Point: 9.3305

>NTDB_id=681467 M1F51_RS05350 WP_267359541.1 1068609..1069295(+) (comEA) [Staphylococcus aureus strain RIVM_M087195]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIVVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=681467 M1F51_RS05350 WP_267359541.1 1068609..1069295(+) (comEA) [Staphylococcus aureus strain RIVM_M087195]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTGTGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.035

99.561

0.956
  comEA Staphylococcus aureus N315

96.035

99.561

0.956