Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   M1F52_RS08110 Genome accession   NZ_CP096522
Coordinates   1685579..1686265 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RIVM_M085090     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1680579..1691265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F52_RS08090 (M1F52_08070) rpsT 1681493..1681744 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  M1F52_RS08095 (M1F52_08075) holA 1681789..1682763 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  M1F52_RS08100 (M1F52_08080) comEC 1682820..1685021 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M1F52_RS08105 (M1F52_08085) - 1685026..1685487 (-) 462 WP_000439690.1 ComE operon protein 2 -
  M1F52_RS08110 (M1F52_08090) comEA 1685579..1686265 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  M1F52_RS08115 (M1F52_08095) - 1686305..1687021 (-) 717 WP_000084838.1 class I SAM-dependent methyltransferase -
  M1F52_RS08120 (M1F52_08100) rsfS 1687024..1687377 (-) 354 WP_001088020.1 ribosome silencing factor -
  M1F52_RS08125 (M1F52_08105) yqeK 1687378..1687962 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  M1F52_RS08130 (M1F52_08110) nadD 1687952..1688521 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  M1F52_RS08135 (M1F52_08115) yhbY 1688524..1688814 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  M1F52_RS08140 (M1F52_08120) aroE 1688818..1689624 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  M1F52_RS08145 (M1F52_08125) yqeH 1689638..1690738 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=681434 M1F52_RS08110 WP_001825349.1 1685579..1686265(-) (comEA) [Staphylococcus aureus strain RIVM_M085090]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=681434 M1F52_RS08110 WP_001825349.1 1685579..1686265(-) (comEA) [Staphylococcus aureus strain RIVM_M085090]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961