Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OK118_RS10650 Genome accession   NZ_CP109894
Coordinates   2349552..2350214 (-) Length   220 a.a.
NCBI ID   WP_004087541.1    Uniprot ID   Q9PAB0
Organism   Xylella fastidiosa subsp. fastidiosa strain CFBP8351     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2344552..2355214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK118_RS10645 (OK118_10640) - 2345722..2349120 (+) 3399 WP_004087540.1 Rne/Rng family ribonuclease -
  OK118_RS10650 (OK118_10645) letA 2349552..2350214 (-) 663 WP_004087541.1 response regulator Regulator
  OK118_RS10655 (OK118_10650) - 2350464..2351237 (-) 774 WP_004087545.1 sulfurtransferase -
  OK118_RS10660 (OK118_10655) - 2352239..2352637 (+) 399 WP_011098322.1 response regulator -
  OK118_RS10665 (OK118_10660) - 2353683..2354294 (-) 612 WP_004087549.1 superoxide dismutase -
  OK118_RS10670 (OK118_10665) - 2354536..2354976 (+) 441 WP_004087554.1 ribonuclease domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23823.92 Da        Isoelectric Point: 7.2164

>NTDB_id=681297 OK118_RS10650 WP_004087541.1 2349552..2350214(-) (letA) [Xylella fastidiosa subsp. fastidiosa strain CFBP8351]
MTIKIFLIDDHTLVRVGMKMILSNELDLEVIGEAETGEAALPQIRELRPNVVLCDMHLPGVSGLEITEKLVKGNYGSRVI
IVSVLEDGPLPKRLLEAGASGYVGKGGDANELLRAIREVALGKRYLGNSIAQNLVLSSLEGGCSPFDVLSPRELEIALLL
IQGLSQGAIAKRLCLSPKTINTHKVRLFAKVDVRDTIALARLAIQYGVSTPEKYSLDKTI

Nucleotide


Download         Length: 663 bp        

>NTDB_id=681297 OK118_RS10650 WP_004087541.1 2349552..2350214(-) (letA) [Xylella fastidiosa subsp. fastidiosa strain CFBP8351]
ATGACTATTAAGATTTTTCTGATTGATGATCATACTCTCGTGCGTGTTGGCATGAAGATGATCTTATCCAATGAATTAGA
TCTCGAAGTGATAGGGGAAGCGGAGACAGGGGAGGCGGCTTTACCACAGATCCGTGAGCTACGCCCGAATGTCGTATTGT
GTGACATGCATCTCCCTGGGGTGAGTGGGCTGGAGATTACAGAAAAATTGGTGAAAGGGAATTATGGTAGCCGTGTAATT
ATTGTTTCGGTGTTGGAAGACGGCCCATTGCCGAAGCGACTGTTAGAGGCTGGAGCTTCTGGTTATGTTGGTAAGGGCGG
TGATGCTAATGAGTTGCTGCGTGCTATCCGTGAAGTGGCTTTAGGGAAGCGCTATCTTGGTAACAGCATTGCGCAGAATT
TGGTGTTGTCAAGCCTTGAAGGAGGATGTTCACCTTTTGATGTTTTGTCACCGCGTGAGTTGGAAATTGCCTTGTTGTTA
ATCCAAGGTCTGAGTCAGGGGGCTATTGCTAAGCGGTTGTGTCTCAGTCCTAAGACAATCAACACTCATAAAGTGCGTTT
GTTCGCTAAAGTTGATGTTCGAGATACCATTGCTCTGGCTCGGTTGGCTATTCAGTACGGGGTGAGTACTCCGGAGAAAT
ATAGTTTAGATAAAACGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PAB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

41.475

98.636

0.409
  letA Legionella pneumophila strain ERS1305867

41.475

98.636

0.409