Detailed information NTG0681193

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OK113_RS02425
• Genome accession: NZ_CP109891
• Coordinates: 564918..566198 (+)
• Length: 426 a.a.
• NCBI ID: WP_004090165.1
• Uniprot ID: Q87E50
• Organism: Xylella fastidiosa subsp. fastidiosa strain CFBP8083
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 559918..571198

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OK113_RS02405 (OK113_02405)	-	560361..560822 (-)	462	WP_004086550.1	hypothetical protein	-
OK113_RS02415 (OK113_02415)	tig	562731..564026 (+)	1296	WP_004090161.1	trigger factor	-
OK113_RS02420 (OK113_02420)	clpP	564164..564790 (+)	627	WP_011097655.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
OK113_RS02425 (OK113_02425)	clpX	564918..566198 (+)	1281	WP_004090165.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OK113_RS02430 (OK113_02430)	lon	566350..568821 (+)	2472	WP_012382467.1	endopeptidase La	-
OK113_RS02435 (OK113_02435)	-	569042..569326 (+)	285	WP_004090176.1	HU family DNA-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 47129.13 Da
• Isoelectric Point: 5.6270

>NTDB_id=681193 OK113_RS02425 WP_004090165.1 564918..566198(+) (clpX) [Xylella fastidiosa subsp. fastidiosa strain CFBP8083]
MSEDRQSRSGDGNKILYCSFCGKSQREVRKLIAGPSVFICDECVELCNDIIREELEEKSQSARSSLPKPKEILEVLDQYV
IGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLHKCDYDVEKAQHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTKNILFICGGAFAGLDKVIQQRCNEVGGIGFGVKVKSSESKRDVGKVLAGVEPEDLIKFGLIPEFVGRLPVVATLDELD
ESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALSAVARKALKRKTGARGLRTIVELVLLDTMYELPSQEGISKVVV
DESVIENKSEPYLIYQTMPAKVASGE

Nucleotide

• Length: 1281 bp

>NTDB_id=681193 OK113_RS02425 WP_004090165.1 564918..566198(+) (clpX) [Xylella fastidiosa subsp. fastidiosa strain CFBP8083]
ATGAGCGAAGACCGGCAAAGCCGTTCTGGTGACGGAAATAAGATTCTTTACTGCTCATTCTGCGGTAAAAGCCAGCGTGA
GGTTCGCAAGCTGATCGCAGGTCCAAGCGTATTCATTTGTGATGAATGCGTTGAGTTGTGTAACGATATTATTCGCGAGG
AACTGGAAGAGAAGTCGCAATCTGCGCGTTCCAGTTTGCCTAAGCCCAAGGAGATACTTGAGGTTTTGGATCAGTATGTC
ATTGGCCAGCAGCGTGCTAAGAGGACTCTTGCTGTAGCCGTCTACAATCATTATAAACGGATCGAAAGTCGGCATAAGAA
TGACGACATCGAATTGGCTAAATCTAATATTTTGTTGGTTGGCCCAACAGGCTCCGGCAAGACATTGCTTGCCGAGACAT
TGGCGCGTTTGCTGAATGTGCCTTTCACGATTGCCGATGCAACCACATTGACTGAGGCTGGCTATGTTGGTGAGGACGTG
GAGAATATTATTCAGAAGTTGTTACATAAGTGTGATTACGACGTTGAAAAGGCGCAACATGGGATCGTCTACATTGATGA
AATAGATAAGATTTCCCGTAAGAGTGAGAATCCATCAATTACCCGAGATGTTTCTGGTGAGGGTGTGCAGCAGGCATTGC
TGAAATTGATAGAAGGTACGGTTGCTTCTGTGCCTCCTCAGGGTGGTCGCAAGCATCCACAGCAGGAATTCCTGCAGGTC
GATACCAAAAATATTTTATTCATCTGTGGCGGTGCTTTTGCTGGTCTAGATAAAGTGATCCAACAGCGTTGCAATGAAGT
TGGTGGTATTGGCTTTGGTGTTAAGGTCAAAAGCTCAGAGAGTAAGCGCGATGTTGGTAAGGTACTAGCTGGTGTCGAGC
CAGAGGACCTGATTAAGTTTGGGTTAATCCCTGAATTCGTTGGGCGATTGCCAGTTGTAGCTACACTTGATGAGCTGGAT
GAGTCGGCTTTGGTTAAAATTTTAACCGAGCCAAAGAACGCTATTACAAAGCAGTTCAAAAAGCTGTTTGAGATGGAGAA
CGTAGAGTTGGAGTTCCGTCAGGACGCGCTTTCAGCAGTGGCTAGGAAAGCTCTTAAGCGCAAGACTGGTGCGCGGGGTC
TCCGTACTATTGTTGAGTTGGTTCTGCTGGATACCATGTACGAACTTCCTTCTCAGGAAGGTATTAGTAAGGTTGTTGTC
GATGAATCGGTTATTGAAAATAAATCTGAGCCTTATCTGATTTATCAAACGATGCCTGCAAAGGTTGCTTCCGGCGAATG
A

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

3D structure

• AlphaFold DB: Q87E50

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.25	93.897	0.585
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.025	93.427	0.514