Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PALA37_RS28265 Genome accession   NZ_CP109850
Coordinates   6150557..6151201 (-) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain PALA37     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 6145557..6156201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA37_RS29810 - 6145845..6146054 (+) 210 WP_071533897.1 transposase -
  PALA37_RS28245 (PALA37_05592) - 6146391..6147251 (+) 861 WP_225011024.1 fimbrial protein -
  PALA37_RS28255 (PALA37_05594) pgsA 6148136..6148696 (-) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PALA37_RS28260 (PALA37_05595) uvrC 6148730..6150556 (-) 1827 WP_031685751.1 excinuclease ABC subunit UvrC -
  PALA37_RS28265 (PALA37_05596) letA 6150557..6151201 (-) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PALA37_RS28270 (PALA37_05597) pqsH 6151543..6152691 (-) 1149 WP_023125848.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  PALA37_RS28275 (PALA37_05598) - 6153306..6154334 (+) 1029 WP_270133884.1 AraC family transcriptional regulator -
  PALA37_RS28280 (PALA37_05599) - 6154350..6155564 (-) 1215 WP_270133886.1 MFS transporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=680772 PALA37_RS28265 WP_003090351.1 6150557..6151201(-) (letA) [Pseudomonas aeruginosa strain PALA37]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=680772 PALA37_RS28265 WP_003090351.1 6150557..6151201(-) (letA) [Pseudomonas aeruginosa strain PALA37]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAGCTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCTTGGAGGCGACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGACCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTACATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAACTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537