Detailed information NTG0680744

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M0M92_RS03865
• Genome accession: NZ_CP096263
• Coordinates: 833694..834494 (-)
• Length: 266 a.a.
• NCBI ID: WP_101989314.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain KP20-558
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 828694..839494

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M0M92_RS03845 (M0M92_03845)	dksA	829274..829729 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
M0M92_RS03850 (M0M92_03850)	sfsA	829892..830608 (-)	717	WP_023292014.1	DNA/RNA nuclease SfsA	-
M0M92_RS03855 (M0M92_03855)	thpR	830608..831144 (-)	537	WP_101989316.1	RNA 2',3'-cyclic phosphodiesterase	-
M0M92_RS03860 (M0M92_03860)	hrpB	831217..833646 (+)	2430	WP_101989315.1	ATP-dependent helicase HrpB	-
M0M92_RS03865 (M0M92_03865)	pilD	833694..834494 (-)	801	WP_101989314.1	A24 family peptidase	Machinery gene
M0M92_RS03870 (M0M92_03870)	-	834509..835237 (-)	729	WP_101989313.1	type II secretion system protein N	-
M0M92_RS03875 (M0M92_03875)	-	835227..835712 (-)	486	WP_049014314.1	type II secretion system protein M	-
M0M92_RS03880 (M0M92_03880)	gspL	835705..836901 (-)	1197	WP_101989312.1	type II secretion system protein GspL	-
M0M92_RS03885 (M0M92_03885)	gspK	836894..837874 (-)	981	WP_101989311.1	type II secretion system minor pseudopilin GspK	-
M0M92_RS03890 (M0M92_03890)	gspJ	837871..838467 (-)	597	WP_023292022.1	type II secretion system minor pseudopilin GspJ	-
M0M92_RS03895 (M0M92_03895)	gspI	838464..838829 (-)	366	WP_032452553.1	type II secretion system minor pseudopilin GspI	-
M0M92_RS03900 (M0M92_03900)	gspH	838826..839341 (-)	516	WP_060591174.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29231.79 Da
• Isoelectric Point: 8.6099

>NTDB_id=680744 M0M92_RS03865 WP_101989314.1 833694..834494(-) (pilD) [Klebsiella quasipneumoniae strain KP20-558]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDEPITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELATGLLFILAGALLAPGLALAGGLVLLSFLLILARIDALTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLLASASGLAWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=680744 M0M92_RS03865 WP_101989314.1 833694..834494(-) (pilD) [Klebsiella quasipneumoniae strain KP20-558]
ATGACGACATTAGCCGCATTATCGCTGCATTTTCCCCTTGTCTGGTATGGTTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGACCCAAACCGCGGACGACGAGCCGATAACCCTCAGCA
CGCCGGGCTCATCCTGCCCGCAGTGTCGCCAGCCGATAGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTCCTGCTGATACTGGCGC
GGATTGACGCCCTGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCACTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCCCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCAGCGGGCTGGCGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425