Detailed information NTG0680598

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M0538_RS21620
• Genome accession: NZ_CP096230
• Coordinates: 4459985..4460785 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae subsp. pneumoniae strain H39
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4454985..4465785

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M0538_RS21585 (M0538_21565)	gspH	4455141..4455656 (+)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-
M0538_RS21590 (M0538_21570)	gspI	4455653..4456018 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
M0538_RS21595 (M0538_21575)	gspJ	4456015..4456611 (+)	597	WP_012737414.1	type II secretion system minor pseudopilin GspJ	-
M0538_RS21600 (M0538_21580)	gspK	4456608..4457594 (+)	987	WP_077250502.1	type II secretion system minor pseudopilin GspK	-
M0538_RS21605 (M0538_21585)	gspL	4457581..4458774 (+)	1194	WP_012737412.1	type II secretion system protein GspL	-
M0538_RS21610 (M0538_21590)	-	4458767..4459252 (+)	486	WP_012737411.1	type II secretion system protein M	-
M0538_RS21615 (M0538_21595)	-	4459242..4459988 (+)	747	WP_012737410.1	type II secretion system protein N	-
M0538_RS21620 (M0538_21600)	pilD	4459985..4460785 (+)	801	WP_004145898.1	prepilin peptidase	Machinery gene
M0538_RS21625 (M0538_21605)	hrpB	4460833..4463262 (-)	2430	WP_012737409.1	ATP-dependent helicase HrpB	-
M0538_RS21630 (M0538_21610)	thpR	4463335..4463871 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
M0538_RS21635 (M0538_21615)	sfsA	4463871..4464587 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
M0538_RS21640 (M0538_21620)	dksA	4464750..4465205 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=680598 M0538_RS21620 WP_004145898.1 4459985..4460785(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain H39]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=680598 M0538_RS21620 WP_004145898.1 4459985..4460785(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain H39]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425